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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   DML2   demeter-like 2 
 ath-r.7   DML2   demeter-like 2 
 ath-m.9   DML2   demeter-like 2 
 ath-e.2   DML2   demeter-like 2 
 ath-m.4.bio   DML2   demeter-like 2 
 ath-m.4.hor   DML2   demeter-like 2 
 ath-m.4.lig   DML2   demeter-like 2 
 ath-m.4.str   DML2   demeter-like 2 
 ath-m.4.tis   DML2   demeter-like 2 
 ath-u.5   DML1   demeter-like 1 
 ath-u.5   DML3   demeter-like protein 3 
 ath-u.5   DME   HhH-GPD base excision DNA repair family protein 
 gma-u.5   100779756   DNA glycosylase/AP lyase ROS1 
 gma-u.5   100787368   protein ROS1A 
 vvi-u.5   100247223   transcriptional activator DEMETER 
 vvi-u.5   100257983   transcriptional activator DEMETER 
 ppo-u.5   7479830   transcriptional activator DEMETER 
 ppo-u.5   18100071   DNA glycosylase/AP lyase ROS1 
 mtr-u.5   25499391   transcriptional activator DEMETER 
 mtr-u.5   11424215   DNA glycosylase/AP lyase ROS1 
 sly-u.5   DML1   DNA demethylase1 
 sly-u.5   DML2   DNA demethylase 2 
 sly-u.5   DML4   DNA demethylase 4 
 osa-u.5   4338944   protein ROS1C-like 
 osa-u.5   9271145   protein ROS1A-like 
 osa-u.5   4329407   DNA glycosylase/AP lyase ROS1 
 zma-u.5   100382817   uncharacterized LOC100382817 
 zma-u.5   103630409   Protein ROS1 
 zma-u.5   109939959   protein ROS1A 

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Top 50 coexpressed genes to DML2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to DML2 (ath-u.5 coexpression data)

CoexMap"820162"


athDML2 | Entrez gene ID : 820162      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 12 2 2 2 2 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006284 [list] [network] base-excision repair  (21 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0035514 [list] [network] DNA demethylase activity  (14 genes)  IEA  
GO:0019104 [list] [network] DNA N-glycosylase activity  (19 genes)  IEA  
Protein NP_001326647.1 [sequence] [blastp]
NP_187612.5 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001326647.1)
nucl 9  (predict for NP_187612.5)
Subcellular
localization
TargetP
other 8  (predict for NP_001326647.1)
other 8  (predict for NP_187612.5)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
DML2

.
ath-r.7
for
DML2

.
ath-m.9
for
DML2

.
ath-e.2
for
DML2

.
ath-m.4.bio
for
DML2

.
ath-m.4.hor
for
DML2

.
ath-m.4.lig
for
DML2

.
ath-m.4.str
for
DML2

.
ath-m.4.tis
for
DML2

.
ath-u.5
for
DML1

.
ath-u.5
for
DML3

.
ath-u.5
for
DME

.
gma-u.5
for
100779756

.
gma-u.5
for
100787368

.
vvi-u.5
for
100247223

.
vvi-u.5
for
100257983

.
ppo-u.5
for
7479830

.
ppo-u.5
for
18100071

.
mtr-u.5
for
25499391

.
mtr-u.5
for
11424215

.
sly-u.5
for
DML1

.
sly-u.5
for
DML2

.
sly-u.5
for
DML4

.
osa-u.5
for
4338944

.
osa-u.5
for
9271145

.
osa-u.5
for
4329407

.
zma-u.5
for
100382817

.
zma-u.5
for
103630409

.
zma-u.5
for
109939959

.


Ortholog ID: 951
Species ath ath gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol DML1 DML3 LOC100788292 DML4 DML2 LOC4338944 LOC9271145 LOC103630409 LOC100280151 LOC103847276 LOC103867278 LOC100247223 LOC18096903 LOC7479830 LOC25483895 LOC123064105 LOC123141492 LOC123446041 LOC123452140 LOC107902775 LOC107918161 LOC125609294 LOC106433122 CHLRE_07g355466v5 LOC8061201 LOC8072510 LOC102594068 LOC102605689 LOC102619180 LOC102612881 LOC100823585 LOC100844361 LOC107760412 LOC107813452
Function* demeter-like 1 demeter-like protein 3 DNA glycosylase/AP lyase ROS1 DNA demethylase 4 DNA demethylase 2 protein ROS1C-like protein ROS1A-like Protein ROS1 uncharacterized LOC100280151 transcriptional activator DEMETER DNA glycosylase/AP lyase ROS1 transcriptional activator DEMETER DEMETER-like protein 3 transcriptional activator DEMETER DNA glycosylase/AP lyase ROS1 protein ROS1C protein ROS1C protein ROS1C-like protein ROS1A-like uncharacterized LOC107902775 transcriptional activator DEMETER DNA glycosylase/AP lyase ROS1-like transcriptional activator DEMETER-like uncharacterized protein protein ROS1 uncharacterized LOC8072510 transcriptional activator DEMETER-like protein ROS1 DNA glycosylase/AP lyase ROS1-like DNA glycosylase/AP lyase ROS1 protein ROS1 protein ROS1 DNA glycosylase/AP lyase ROS1 protein ROS1A-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00620 Pyruvate metabolism 3
bra01200 Carbon metabolism 3
bra00010 Glycolysis / Gluconeogenesis 2
bra00020 Citrate cycle (TCA cycle) 2
bra00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 3
mtr00562 Inositol phosphate metabolism 2
mtr04070 Phosphatidylinositol signaling system 2
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03082 ATP-dependent chromatin remodeling 2
nta03022 Basal transcription factors 2
nta04120 Ubiquitin mediated proteolysis 2
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818224 829552 100788292 101251080 101263652 4338944 9271145 103630409 100280151 103847276 103867278 100247223 18096903 7479830 25483895 123064105 123141492 123446041 123452140 107902775 107918161 125609294 106433122 66054234 8061201 8072510 102594068 102605689 102619180 102612881 100823585 100844361 107760412 107813452
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