ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT3G11950	TRAF-like superfamily protein
ath-r.7	AT3G11950	TRAF-like superfamily protein
ath-e.2	AT3G11950	TRAF-like superfamily protein
bra-r.6	103870293	myosin-2
bra-r.6	103859422	reticulocyte binding protein 2 homolog b
bna-r.1	106353070	reticulocyte-binding protein homolog 2a
bna-r.1	106415088	calponin homology domain-containing protein DDB_G0272472-like
bna-r.1	106401812	reticulocyte-binding protein homolog 2a
ghi-r.1	107889474	TNF receptor-associated factor 3
ghi-r.1	107891226	uncharacterized LOC107891226
ghi-r.1	107922348	uncharacterized LOC107922348
cit-r.1	102624039	uncharacterized LOC102624039
gma-u.5	100799182	uncharacterized LOC100799182
gma-u.5	100819268	uncharacterized LOC100819268
gma-u.5	100802183	uncharacterized LOC100802183
vvi-u.5	100246957	uncharacterized LOC100246957
ppo-u.5	7469915	uncharacterized LOC7469915
mtr-u.5	25483594	uncharacterized LOC25483594
sly-u.5	101248379	uncharacterized LOC101248379
sot-r.1	102579801	uncharacterized LOC102579801
nta-r.1	107830301	uncharacterized LOC107830301
osa-u.5	4329918	uncharacterized LOC4329918
osa-u.5	9271601	uncharacterized LOC9271601
zma-u.5	100285858	prenyltransferase/ zinc ion binding protein
zma-u.5	100194079	uncharacterized LOC100194079
zma-u.5	100192987	TRAF-like superfamily protein
tae-r.2	123137417	TNF receptor-associated factor family protein DDB_G0290931
tae-r.2	123127661	uncharacterized LOC123127661
tae-r.2	123052049	uncharacterized LOC123052049
hvu-r.1	123425258	uncharacterized LOC123425258
hvu-r.1	123401350	uncharacterized LOC123401350
sbi-r.1	8056504	TNF receptor-associated factor family protein DDB_G0272829
sbi-r.1	8067636	uncharacterized LOC8067636
bdi-r.1	100836090	uncharacterized LOC100836090
bdi-r.1	100843188	uncharacterized LOC100843188
cre-r.1	CHLRE_03g201150v5	uncharacterized protein

Top 50 coexpressed genes to AT3G11950 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G11950 (ath-u.5 coexpression data)

CoexMap"820368"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009941 [list] [network] chloroplast envelope	(585 genes)	HDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

GO:0008270 [list] [network] zinc ion binding

(391 genes)

IEA

Protein

NP_001189865.1 [sequence] [blastp]
NP_001326499.1 [sequence] [blastp]
NP_001326500.1 [sequence] [blastp]
NP_001326501.1 [sequence] [blastp]
NP_187801.3 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 2, cysk 2, pero 1	(predict for NP_001189865.1)
nucl 4, cyto 2, cysk 2, pero 1	(predict for NP_001326499.1)
nucl 4, cyto 2, cysk 2, pero 1	(predict for NP_001326500.1)
nucl 4, cyto 2, cysk 2, pero 1	(predict for NP_001326501.1)
nucl 4, cyto 2, cysk 2, pero 1	(predict for NP_187801.3)

Subcellular
localization
TargetP

other 9	(predict for NP_001189865.1)
other 9	(predict for NP_001326499.1)
other 9	(predict for NP_001326500.1)
other 9	(predict for NP_001326501.1)
other 9	(predict for NP_187801.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G11950	ath-r.7 for AT3G11950	ath-e.2 for AT3G11950	bra-r.6 for 103870293	bra-r.6 for 103859422	bna-r.1 for 106353070	bna-r.1 for 106415088	bna-r.1 for 106401812	ghi-r.1 for 107889474	ghi-r.1 for 107891226	ghi-r.1 for 107922348	cit-r.1 for 102624039	gma-u.5 for 100799182	gma-u.5 for 100819268	gma-u.5 for 100802183	vvi-u.5 for 100246957	ppo-u.5 for 7469915	mtr-u.5 for 25483594	sly-u.5 for 101248379	sot-r.1 for 102579801	nta-r.1 for 107830301	osa-u.5 for 4329918	osa-u.5 for 9271601	zma-u.5 for 100285858	zma-u.5 for 100194079	zma-u.5 for 100192987	tae-r.2 for 123137417	tae-r.2 for 123127661	tae-r.2 for 123052049	hvu-r.1 for 123425258	hvu-r.1 for 123401350	sbi-r.1 for 8056504	sbi-r.1 for 8067636	bdi-r.1 for 100836090	bdi-r.1 for 100843188	cre-r.1 for CHLRE_03g201150v5

Ortholog

Ortholog ID: 2725

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

TRAF-like superfamily protein

myosin-2

reticulocyte binding protein 2 homolog b

reticulocyte-binding protein homolog 2a

uncharacterized LOC106452510

TNF receptor-associated factor 3

uncharacterized LOC107891226

uncharacterized LOC107934781

uncharacterized LOC102624039

uncharacterized LOC100799182

uncharacterized LOC100819268

uncharacterized LOC100802183

uncharacterized LOC100246957

uncharacterized LOC7469915

uncharacterized LOC25483594

uncharacterized LOC101248379

uncharacterized LOC102579801

uncharacterized LOC107830301

uncharacterized LOC107818549

uncharacterized LOC9271601

uncharacterized LOC4335190

prenyltransferase/ zinc ion binding protein

uncharacterized LOC100194079

TRAF-like superfamily protein

uncharacterized LOC123052049

TNF receptor-associated factor family protein DDB_G0290931

uncharacterized LOC123149569

uncharacterized LOC123425258

uncharacterized LOC123401350

TNF receptor-associated factor family protein DDB_G0272829

uncharacterized LOC8067636

uncharacterized LOC100836090

uncharacterized LOC100843188

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna04382	Cornified envelope formation	4
bna00562	Inositol phosphate metabolism	3
bna04070	Phosphatidylinositol signaling system	3
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00514	Other types of O-glycan biosynthesis	4
ghi03083	Polycomb repressive complex	4
ghi00562	Inositol phosphate metabolism	2
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00514	Other types of O-glycan biosynthesis	4
ghi03083	Polycomb repressive complex	4
ghi00562	Inositol phosphate metabolism	2
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00511	Other glycan degradation	3
ghi00600	Sphingolipid metabolism	3
ghi04382	Cornified envelope formation	3
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit00280	Valine, leucine and isoleucine degradation	2
cit00410	beta-Alanine metabolism	2
cit00640	Propanoate metabolism	2
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	6
gma04120	Ubiquitin mediated proteolysis	2
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00561	Glycerolipid metabolism	4
gma00566	Sulfoquinovose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01250	Biosynthesis of nucleotide sugars	4
vvi00520	Amino sugar and nucleotide sugar metabolism	3
vvi04814	Motor proteins	2
vvi00541	Biosynthesis of various nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01250	Biosynthesis of nucleotide sugars	8
ppo00541	Biosynthesis of various nucleotide sugars	6
ppo01240	Biosynthesis of cofactors	5
ppo00520	Amino sugar and nucleotide sugar metabolism	4
ppo00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2
sly04075	Plant hormone signal transduction	2
sly04626	Plant-pathogen interaction	2
sly00020	Citrate cycle (TCA cycle)	2
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	6
nta03030	DNA replication	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	6
nta03030	DNA replication	4
nta00073	Cutin, suberine and wax biosynthesis	2
nta00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00600	Sphingolipid metabolism	2
zma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3
tae00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4
sbi03250	Viral life cycle - HIV-1	2
sbi03272	Virion - Hepatitis viruses	2

Expression

Expression pattern

Entrez Gene ID^*

820368

103870293

103859422

106353070

106401812

106452510

107889474

107891226

107934781

102624039

100799182

100819268

100802183

100246957

7469915

25483594

101248379

102579801

107830301

107818549

9271601

4335190

100285858

100194079

100192987

123052049

123144765

123149569

123425258

123401350

8056504

8067636

100836090

100843188

5718922

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	3	3	1	3	1	1	1	1	1	1	2	3	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G11950 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G11950 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**