ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT3G12590	uncharacterized protein
ath-r.7	AT3G12590	uncharacterized protein
ath-e.2	AT3G12590	uncharacterized protein
bra-r.6	103845430	uncharacterized LOC103845430
bna-r.1	106401234	uncharacterized LOC106401234
bna-r.1	106412799	uncharacterized LOC106412799
bna-r.1	106351534	uncharacterized LOC106351534
ghi-r.1	107897821	uncharacterized LOC107897821
ghi-r.1	107959877	uncharacterized LOC107959877
ghi-r.1	107938198	uncharacterized LOC107938198
cit-r.1	102611798	uncharacterized LOC102611798
gma-u.5	100813752	uncharacterized LOC100813752
gma-u.5	100800748	uncharacterized LOC100800748
gma-u.5	100793037	uncharacterized LOC100793037
vvi-u.5	100263302	uncharacterized LOC100263302
ppo-u.5	7458591	uncharacterized LOC7458591
ppo-u.5	7457931	uncharacterized LOC7457931
mtr-u.5	11443330	uncharacterized LOC11443330
sly-u.5	101259445	uncharacterized LOC101259445
sot-r.1	102602459	uncharacterized LOC102602459
nta-r.1	107829543	uncharacterized LOC107829543
nta-r.1	107761091	uncharacterized LOC107761091
osa-u.5	4324294	uncharacterized LOC4324294
zma-u.5	103650684	uncharacterized LOC103650684
tae-r.2	123081022	uncharacterized LOC123081022
tae-r.2	123072864	uncharacterized LOC123072864
tae-r.2	123063714	uncharacterized LOC123063714
hvu-r.1	123445714	uncharacterized LOC123445714
sbi-r.1	110433786	uncharacterized LOC110433786
sbi-r.1	8155598	uncharacterized LOC8155598
bdi-r.1	100842036	uncharacterized LOC100842036
cre-r.1	CHLRE_17g707100v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

Protein

NP_001326784.1 [sequence] [blastp]
NP_187865.6 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, vacu 2, cyto 1, E.R. 1, cyto_E.R. 1	(predict for NP_001326784.1)
chlo 3, plas 3, E.R. 2, chlo_mito 2, mito_plas 2	(predict for NP_187865.6)

Subcellular
localization
TargetP

other 9	(predict for NP_001326784.1)
chlo 9	(predict for NP_187865.6)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G12590	ath-r.7 for AT3G12590	ath-e.2 for AT3G12590	bra-r.6 for 103845430	bna-r.1 for 106401234	bna-r.1 for 106412799	bna-r.1 for 106351534	ghi-r.1 for 107897821	ghi-r.1 for 107959877	ghi-r.1 for 107938198	cit-r.1 for 102611798	gma-u.5 for 100813752	gma-u.5 for 100800748	gma-u.5 for 100793037	vvi-u.5 for 100263302	ppo-u.5 for 7458591	ppo-u.5 for 7457931	mtr-u.5 for 11443330	sly-u.5 for 101259445	sot-r.1 for 102602459	nta-r.1 for 107829543	nta-r.1 for 107761091	osa-u.5 for 4324294	zma-u.5 for 103650684	tae-r.2 for 123081022	tae-r.2 for 123072864	tae-r.2 for 123063714	hvu-r.1 for 123445714	sbi-r.1 for 110433786	sbi-r.1 for 8155598	bdi-r.1 for 100842036	cre-r.1 for CHLRE_17g707100v5

Ortholog

Ortholog ID: 6263

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized protein

uncharacterized LOC103845430

uncharacterized LOC106351534

uncharacterized LOC106353096

uncharacterized LOC106377475

uncharacterized LOC107959877

uncharacterized LOC107938198

uncharacterized LOC107926052

uncharacterized LOC102611798

uncharacterized LOC100813752

uncharacterized LOC100793037

uncharacterized LOC100791584

uncharacterized LOC100263302

uncharacterized LOC7458591

uncharacterized LOC7457931

uncharacterized LOC11443330

uncharacterized LOC101259445

uncharacterized LOC102602459

uncharacterized LOC107829543

uncharacterized LOC107761091

uncharacterized LOC4324294

uncharacterized LOC103650684

uncharacterized LOC123081022

uncharacterized LOC123072864

uncharacterized LOC123063714

uncharacterized LOC123445714

uncharacterized LOC110433786

uncharacterized LOC8155598

uncharacterized LOC100842036

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	2
bra04136	Autophagy - other	2
bra04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	3
cit04142	Lysosome	3
cit00562	Inositol phosphate metabolism	2
cit04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00562	Inositol phosphate metabolism	2
gma04070	Phosphatidylinositol signaling system	2
gma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00051	Fructose and mannose metabolism	2
gma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00010	Glycolysis / Gluconeogenesis	3
sot00591	Linoleic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3
tae04144	Endocytosis	3
tae05100	Bacterial invasion of epithelial cells	3
tae03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae02010	ABC transporters	2
tae03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	6
cre03250	Viral life cycle - HIV-1	3
cre03272	Virion - Hepatitis viruses	3
cre00562	Inositol phosphate metabolism	2
cre04070	Phosphatidylinositol signaling system	2

Expression

Expression pattern

Entrez Gene ID^*

820439

103845430

106351534

106353096

106377475

107959877

107938198

107926052

102611798

100813752

100793037

100791584

100263302

7458591

7457931

11443330

101259445

102602459

107829543

107761091

4324294

103650684

123081022

123072864

123063714

123445714

110433786

8155598

100842036

5717193

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT3G12590 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G12590 (ath-u.5 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	1	3	3	1	3	1	2	1	1	1	2	1	1	3	1	2	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G12590 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G12590 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**