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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PUT4   Amino acid permease family protein 
 ath-r.7   PUT4   Amino acid permease family protein 
 ath-m.9   PUT4   Amino acid permease family protein 
 ath-e.2   PUT4   Amino acid permease family protein 
 ath-m.4.bio   PUT4   Amino acid permease family protein 
 ath-m.4.hor   PUT4   Amino acid permease family protein 
 ath-m.4.lig   PUT4   Amino acid permease family protein 
 ath-m.4.str   PUT4   Amino acid permease family protein 
 ath-m.4.tis   PUT4   Amino acid permease family protein 
 bra-r.6   103859526   probable polyamine transporter At3g13620 
 bra-r.6   103870108   probable polyamine transporter At3g13620 
 bna-r.1   106452294   probable polyamine transporter At3g13620 
 bna-r.1   106440606   probable polyamine transporter At3g13620 
 ghi-r.1   107948548   probable polyamine transporter At3g13620 
 ghi-r.1   107945590   probable polyamine transporter At3g13620 
 ghi-r.1   107914133   probable polyamine transporter At3g13620 
 cit-r.1   102609523   probable polyamine transporter At3g13620 
 cit-r.1   102628979   probable polyamine transporter At3g13620 
 gma-u.5   100812773   probable polyamine transporter At3g13620 
 gma-u.5   100801170   probable polyamine transporter At3g13620 
 vvi-u.5   100258779   probable polyamine transporter At3g13620 
 vvi-u.5   100263949   probable polyamine transporter At3g13620 
 ppo-u.5   7457710   probable polyamine transporter At3g13620 
 ppo-u.5   7483256   probable polyamine transporter At3g13620 
 mtr-u.5   11442495   probable polyamine transporter At3g13620 
 mtr-u.5   11412906   probable polyamine transporter At3g13620 
 sly-u.5   101243629   probable polyamine transporter At3g13620 
 sly-u.5   101258889   probable polyamine transporter At3g13620 
 sot-r.1   102602748   probable polyamine transporter At3g13620 
 sot-r.1   102603417   probable polyamine transporter At3g13620 
 sot-r.1   102578857   probable polyamine transporter At3g13620 
 nta-r.1   142164311   putative polyamine transporter At3g13620 
 nta-r.1   107785652   putative polyamine transporter At3g13620 
 nta-r.1   107779496   putative polyamine transporter At3g13620 
 osa-u.5   4332954   probable polyamine transporter At3g13620 
 zma-u.5   100285888   cationic amino acid transporter 
 tae-r.2   123149098   probable polyamine transporter At3g13620 
 tae-r.2   123160995   probable polyamine transporter At3g13620 
 hvu-r.1   123411724   probable polyamine transporter At3g13620 
 sbi-r.1   8080481   probable polyamine transporter At3g13620 
 bdi-r.1   100838656   probable polyamine transporter At3g13620 

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Top 50 coexpressed genes to PUT4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PUT4 (ath-u.5 coexpression data)

CoexMap"820565"


athPUT4 | Entrez gene ID : 820565      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 2 3 2 2 2 2 2 2 3 3 1 1 2 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0015846 [list] [network] polyamine transport  (6 genes)  IDA  
GO CC
GO:0005886 [list] [network] plasma membrane  (2598 genes)  ISM  
GO MF
GO:0015203 [list] [network] polyamine transmembrane transporter activity  (5 genes)  IDA IGI  
GO:0015174 [list] [network] basic amino acid transmembrane transporter activity  (17 genes)  ISS  
Protein NP_566460.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 5,  vacu 2,  golg 2  (predict for NP_566460.1)
Subcellular
localization
TargetP
other 9  (predict for NP_566460.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PUT4
ath-r.7
for
PUT4
ath-m.9
for
PUT4
ath-e.2
for
PUT4
ath-m.4.bio
for
PUT4
ath-m.4.hor
for
PUT4
ath-m.4.lig
for
PUT4
ath-m.4.str
for
PUT4
ath-m.4.tis
for
PUT4
bra-r.6
for
103859526
bra-r.6
for
103870108
bna-r.1
for
106452294
bna-r.1
for
106440606
ghi-r.1
for
107948548
ghi-r.1
for
107945590
ghi-r.1
for
107914133
cit-r.1
for
102609523
cit-r.1
for
102628979
gma-u.5
for
100812773
gma-u.5
for
100801170
vvi-u.5
for
100258779
vvi-u.5
for
100263949
ppo-u.5
for
7457710
ppo-u.5
for
7483256
mtr-u.5
for
11442495
mtr-u.5
for
11412906
sly-u.5
for
101243629
sly-u.5
for
101258889
sot-r.1
for
102602748
sot-r.1
for
102603417
sot-r.1
for
102578857
nta-r.1
for
142164311
nta-r.1
for
107785652
nta-r.1
for
107779496
osa-u.5
for
4332954
zma-u.5
for
100285888
tae-r.2
for
123149098
tae-r.2
for
123160995
hvu-r.1
for
123411724
sbi-r.1
for
8080481
bdi-r.1
for
100838656


Ortholog ID: 3453
Species ath bra bra bna ghi ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot sot nta nta nta osa zma tae tae hvu sbi bdi
Symbol PUT4 LOC103859526 LOC103870108 LOC106452294 LOC107948548 LOC107945590 LOC107907387 LOC102609523 LOC102628979 LOC100801170 LOC100801109 LOC100258779 LOC100263949 LOC7457710 LOC7483256 LOC11442495 LOC11412906 LOC101243629 LOC101258889 LOC102602748 LOC102603417 LOC102578857 LOC142164311 LOC107785559 LOC142164312 LOC4332954 LOC100285888 LOC123149098 LOC123169158 LOC123411724 LOC8080481 LOC100838656
Function* Amino acid permease family protein probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 putative polyamine transporter At3g13620 putative polyamine transporter At3g13620 putative polyamine transporter At3g13620 probable polyamine transporter At3g13620 cationic amino acid transporter probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620 probable polyamine transporter At3g13620
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 6
ath00941 Flavonoid biosynthesis 3
ath00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
ath01230 Biosynthesis of amino acids 2
ath00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00250 Alanine, aspartate and glutamate metabolism 5
ghi01230 Biosynthesis of amino acids 5
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04081 Hormone signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00053 Ascorbate and aldarate metabolism 2
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma01240 Biosynthesis of cofactors 2
gma01250 Biosynthesis of nucleotide sugars 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00250 Alanine, aspartate and glutamate metabolism 13
tae00460 Cyanoamino acid metabolism 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00250 Alanine, aspartate and glutamate metabolism 8
tae00460 Cyanoamino acid metabolism 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00270 Cysteine and methionine metabolism 5
hvu00670 One carbon pool by folate 5
hvu01230 Biosynthesis of amino acids 4
hvu01240 Biosynthesis of cofactors 4
hvu00999 Biosynthesis of various plant secondary metabolites 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820565 103859526 103870108 106452294 107948548 107945590 107907387 102609523 102628979 100801170 100801109 100258779 100263949 7457710 7483256 11442495 11412906 101243629 101258889 102602748 102603417 102578857 142164311 107785559 142164312 4332954 100285888 123149098 123169158 123411724 8080481 100838656
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