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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LDL2   LSD1-like2 
 ath-r.7   LDL2   LSD1-like2 
 ath-m.9   LDL2   LSD1-like2 
 ath-e.2   LDL2   LSD1-like2 
 ath-m.4.bio   LDL2   LSD1-like2 
 ath-m.4.hor   LDL2   LSD1-like2 
 ath-m.4.lig   LDL2   LSD1-like2 
 ath-m.4.str   LDL2   LSD1-like2 
 ath-m.4.tis   LDL2   LSD1-like2 
 bra-r.6   103842654   lysine-specific histone demethylase 1 homolog 2 
 bna-r.1   106426468   lysine-specific histone demethylase 1 homolog 2 
 bna-r.1   125577814   lysine-specific histone demethylase 1 homolog 2-like 
 ghi-r.1   107919982   lysine-specific histone demethylase 1 homolog 2 
 ghi-r.1   107895290   lysine-specific histone demethylase 1 homolog 2-like 
 cit-r.1   102631397   lysine-specific histone demethylase 1 homolog 2 
 gma-u.5   100809901   lysine-specific histone demethylase 1 homolog 2 
 vvi-u.5   100262290   lysine-specific histone demethylase 1 homolog 2 
 ppo-u.5   7460853   lysine-specific histone demethylase 1 homolog 2 
 mtr-u.5   11423713   lysine-specific histone demethylase 1 homolog 2 
 mtr-u.5   25502558   lysine-specific histone demethylase 1 homolog 2 
 sly-u.5   101245565   lysine-specific histone demethylase 1 homolog 2-like 
 sly-u.5   101245271   lysine-specific histone demethylase 1 homolog 2-like 
 sot-r.1   102587655   lysine-specific histone demethylase 1 homolog 2 
 nta-r.1   107784757   lysine-specific histone demethylase 1 homolog 2 
 nta-r.1   107794597   lysine-specific histone demethylase 1 homolog 2-like 
 osa-u.5   4344644   lysine-specific histone demethylase 1 homolog 2-like 
 zma-u.5   103641305   lysine-specific histone demethylase 1 homolog 2 
 tae-r.2   123147418   lysine-specific histone demethylase 1 homolog 2 
 tae-r.2   123157372   lysine-specific histone demethylase 1 homolog 2 
 tae-r.2   123165349   lysine-specific histone demethylase 1 homolog 2 
 hvu-r.1   123409988   lysine-specific histone demethylase 1 homolog 2 
 sbi-r.1   8076552   lysine-specific histone demethylase 1 homolog 2 
 bdi-r.1   100835742   lysine-specific histone demethylase 1 homolog 2 
 cre-r.1   CHLRE_07g318651v5   uncharacterized protein 

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Top 50 coexpressed genes to LDL2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LDL2 (ath-u.5 coexpression data)

CoexMap"820577"


athLDL2 | Entrez gene ID : 820577      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 2 2 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
GO:0042800 [list] [network] histone H3K4 methyltransferase activity  (9 genes)  IMP  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_187981.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  cyto_plas 3  (predict for NP_187981.1)
Subcellular
localization
TargetP
other 8  (predict for NP_187981.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LDL2
ath-r.7
for
LDL2
ath-m.9
for
LDL2
ath-e.2
for
LDL2
ath-m.4.bio
for
LDL2
ath-m.4.hor
for
LDL2
ath-m.4.lig
for
LDL2
ath-m.4.str
for
LDL2
ath-m.4.tis
for
LDL2
bra-r.6
for
103842654
bna-r.1
for
106426468
bna-r.1
for
125577814
ghi-r.1
for
107919982
ghi-r.1
for
107895290
cit-r.1
for
102631397
gma-u.5
for
100809901
vvi-u.5
for
100262290
ppo-u.5
for
7460853
mtr-u.5
for
11423713
mtr-u.5
for
25502558
sly-u.5
for
101245565
sly-u.5
for
101245271
sot-r.1
for
102587655
nta-r.1
for
107784757
nta-r.1
for
107794597
osa-u.5
for
4344644
zma-u.5
for
103641305
tae-r.2
for
123147418
tae-r.2
for
123157372
tae-r.2
for
123165349
hvu-r.1
for
123409988
sbi-r.1
for
8076552
bdi-r.1
for
100835742
cre-r.1
for
CHLRE_07g318651v5


Ortholog ID: 9476
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr mtr sly sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LDL2 LOC103842654 LOC106426468 LOC125577814 LOC107919982 LOC107895290 LOC102631397 LOC100809901 LOC100262290 LOC7460853 LOC11423713 LOC25502558 LOC101245565 LOC101245271 LOC102587655 LOC107784757 LOC107794597 LOC4344644 LOC103641305 LOC123147418 LOC123157372 LOC123165349 LOC123409988 LOC8076552 LOC100835742 CHLRE_07g318651v5
Function* LSD1-like2 lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2-like lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2-like lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2-like lysine-specific histone demethylase 1 homolog 2-like lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2-like lysine-specific histone demethylase 1 homolog 2-like lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2 lysine-specific histone demethylase 1 homolog 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04820 Cytoskeleton in muscle cells 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04820 Cytoskeleton in muscle cells 2
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo02010 ABC transporters 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 3
sbi04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820577 103842654 106426468 125577814 107919982 107895290 102631397 100809901 100262290 7460853 11423713 25502558 101245565 101245271 102587655 107784757 107794597 4344644 103641305 123147418 123157372 123165349 123409988 8076552 100835742 5726377
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