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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CYP90D1   cytochrome P450, family 90, subfamily D, polypeptide 1 
 ath-r.7   CYP90D1   cytochrome P450, family 90, subfamily D, polypeptide 1 
 ath-m.9   CYP90D1   cytochrome P450, family 90, subfamily D, polypeptide 1 
 ath-e.2   CYP90D1   cytochrome P450, family 90, subfamily D, polypeptide 1 
 ath-m.4.bio   CYP90D1   cytochrome P450, family 90, subfamily D, polypeptide 1 
 ath-m.4.hor   CYP90D1   cytochrome P450, family 90, subfamily D, polypeptide 1 
 ath-m.4.lig   CYP90D1   cytochrome P450, family 90, subfamily D, polypeptide 1 
 ath-m.4.str   CYP90D1   cytochrome P450, family 90, subfamily D, polypeptide 1 
 ath-m.4.tis   CYP90D1   cytochrome P450, family 90, subfamily D, polypeptide 1 
 ath-u.5   BR6OX2   brassinosteroid-6-oxidase 2 
 ath-u.5   ROT3   Cytochrome P450 superfamily protein 
 ath-u.5   BR6OX1   brassinosteroid-6-oxidase 1 
 bra-r.6   103868633   3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1 
 bra-r.6   103862467   3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1 
 bra-r.6   103870101   3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 
 bna-r.1   106400040   cytochrome P450 85A2 
 bna-r.1   106397123   cytochrome P450 85A2 
 ghi-r.1   107906110   3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 
 ghi-r.1   107910165   cytochrome P450 85A 
 ghi-r.1   107913036   3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1 
 cit-r.1   102610008   3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 
 cit-r.1   102613870   cytochrome P450 85A 
 cit-r.1   102623590   3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1 
 gma-u.5   100797868   3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 
 gma-u.5   100800210   cytochrome P450 90B1 
 vvi-u.5   100259060   3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1 
 vvi-u.5   BR6OX1   brassinosteroid-6-oxidase 
 ppo-u.5   18107339   cytochrome P450 85A 
 ppo-u.5   18096744   3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 
 ppo-u.5   7465155   3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 
 mtr-u.5   11406632   3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1 
 mtr-u.5   25497603   cytochrome P450 85A 
 mtr-u.5   11422367   cytochrome P450 85A 
 sly-u.5   101245605   3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1 
 sot-r.1   102598106   3-epi-6-deoxocathasterone 23-monooxygenase 
 nta-r.1   107816861   3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1-like 
 nta-r.1   107795780   3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1-like 
 nta-r.1   107795325   3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1-like 
 osa-u.5   9266092   cytochrome P450 90D2 
 osa-u.5   4333399   cytochrome P450 85A1-like 
 osa-u.5   4327329   cytochrome P450 90D2 
 zma-u.5   100384722   putative cytochrome P450 superfamily protein 
 zma-u.5   103630138   cytochrome P450 90D2 
 zma-u.5   100193331   putative cytochrome P450 superfamily protein 
 tae-r.2   123043102   cytochrome P450 85A1 
 hvu-r.1   123431503   cytochrome P450 85A1-like 
 hvu-r.1   123431500   cytochrome P450 85A1-like 
 hvu-r.1   123442877   cytochrome P450 90D2-like 
 sbi-r.1   8082830   cytochrome P450 90D2 
 sbi-r.1   8062533   cytochrome P450 85A1 
 sbi-r.1   8055723   cytochrome P450 90D2 
 bdi-r.1   100837364   cytochrome P450 90D2 
 bdi-r.1   100837653   cytochrome P450 85A1 
 bdi-r.1   100839691   cytochrome P450 90D2 

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Top 50 coexpressed genes to CYP90D1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CYP90D1 (ath-u.5 coexpression data)

CoexMap"820582"


athCYP90D1 | Entrez gene ID : 820582      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 3 2 3 3 2 2 3 3 1 1 3 3 3 1 3 3 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00905 [list] [network] Brassinosteroid biosynthesis (9 genes)
GO BP
GO:0016132 [list] [network] brassinosteroid biosynthetic process  (12 genes)  IMP  
GO:0048441 [list] [network] petal development  (25 genes)  IGI  
GO:0048443 [list] [network] stamen development  (113 genes)  IGI  
GO:0048366 [list] [network] leaf development  (371 genes)  IGI  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0016709 [list] [network] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen  (39 genes)  IDA  
Protein NP_001327080.1 [sequence] [blastp]
NP_566462.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  cyto 1,  mito 1,  extr 1  (predict for NP_001327080.1)
chlo 6,  nucl 2,  extr 1,  cyto_nucl 1  (predict for NP_566462.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_001327080.1)
scret 9  (predict for NP_566462.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CYP90D1
ath-r.7
for
CYP90D1
ath-m.9
for
CYP90D1
ath-e.2
for
CYP90D1
ath-m.4.bio
for
CYP90D1
ath-m.4.hor
for
CYP90D1
ath-m.4.lig
for
CYP90D1
ath-m.4.str
for
CYP90D1
ath-m.4.tis
for
CYP90D1
ath-u.5
for
BR6OX2
ath-u.5
for
ROT3
ath-u.5
for
BR6OX1
bra-r.6
for
103868633
bra-r.6
for
103862467
bra-r.6
for
103870101
bna-r.1
for
106400040
bna-r.1
for
106397123
ghi-r.1
for
107906110
ghi-r.1
for
107910165
ghi-r.1
for
107913036
cit-r.1
for
102610008
cit-r.1
for
102613870
cit-r.1
for
102623590
gma-u.5
for
100797868
gma-u.5
for
100800210
vvi-u.5
for
100259060
vvi-u.5
for
BR6OX1
ppo-u.5
for
18107339
ppo-u.5
for
18096744
ppo-u.5
for
7465155
mtr-u.5
for
11406632
mtr-u.5
for
25497603
mtr-u.5
for
11422367
sly-u.5
for
101245605
sot-r.1
for
102598106
nta-r.1
for
107816861
nta-r.1
for
107795780
nta-r.1
for
107795325
osa-u.5
for
9266092
osa-u.5
for
4333399
osa-u.5
for
4327329
zma-u.5
for
100384722
zma-u.5
for
103630138
zma-u.5
for
100193331
tae-r.2
for
123043102
hvu-r.1
for
123431503
hvu-r.1
for
123431500
hvu-r.1
for
123442877
sbi-r.1
for
8082830
sbi-r.1
for
8062533
sbi-r.1
for
8055723
bdi-r.1
for
100837364
bdi-r.1
for
100837653
bdi-r.1
for
100839691


Ortholog ID: 632
Species ath ath ath bra bra bra bna bna bna ghi ghi cit cit gma gma vvi ppo ppo mtr mtr mtr sly sly sot nta nta nta osa osa osa zma zma zma tae hvu hvu hvu sbi sbi sbi bdi bdi bdi
Symbol CYP90D1 ROT3 BR6OX1 LOC103864167 LOC103837220 LOC103842602 LOC106400040 LOC106369862 LOC106349108 LOC107910165 LOC107936555 LOC102610008 LOC102623590 LOC100785414 LOC100805958 BR6OX1 LOC18096744 LOC7495513 LOC11406632 LOC25497603 LOC25500440 LOC101245605 CYP85A1 LOC102603315 LOC107795780 LOC107771928 LOC107760973 LOC9266092 LOC4333399 LOC4327329 LOC100384722 LOC103630138 LOC100193331 LOC123186954 LOC123431503 LOC123431500 LOC123408763 LOC8082830 LOC8062533 LOC8055723 LOC100837364 LOC100837653 LOC100839691
Function* cytochrome P450, family 90, subfamily D, polypeptide 1 Cytochrome P450 superfamily protein brassinosteroid-6-oxidase 1 cytochrome P450 85A1 cytochrome P450 85A2 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 cytochrome P450 85A2 3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1 cytochrome P450 85A2-like cytochrome P450 85A 3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1 cytochrome P450 85A-like cytochrome P450 85A brassinosteroid-6-oxidase 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1 3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1 cytochrome P450 85A 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1 6-deoxocastasterone oxidase cytochrome P450 85A1 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1-like 3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1 cytochrome P450 85A1 cytochrome P450 90D2 cytochrome P450 85A1-like cytochrome P450 90D2 putative cytochrome P450 superfamily protein cytochrome P450 90D2 putative cytochrome P450 superfamily protein cytochrome P450 85A1 cytochrome P450 85A1-like cytochrome P450 85A1-like cytochrome P450 85A1-like cytochrome P450 90D2 cytochrome P450 85A1 cytochrome P450 90D2 cytochrome P450 90D2 cytochrome P450 85A1 cytochrome P450 90D2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00905 Brassinosteroid biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00905 Brassinosteroid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00905 Brassinosteroid biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00561 Glycerolipid metabolism 2
cit00564 Glycerophospholipid metabolism 2
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00905 Brassinosteroid biosynthesis 4
gma00904 Diterpenoid biosynthesis 2
gma00040 Pentose and glucuronate interconversions 2
gma02010 ABC transporters 2
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00905 Brassinosteroid biosynthesis 4
gma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00905 Brassinosteroid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00905 Brassinosteroid biosynthesis 4
mtr03020 RNA polymerase 2
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 9
nta00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 10
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
nta00460 Cyanoamino acid metabolism 2
nta00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa04712 Circadian rhythm - plant 2
osa04016 MAPK signaling pathway - plant 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00052 Galactose metabolism 3
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00905 Brassinosteroid biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 5
sbi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00052 Galactose metabolism 2
sbi00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 4
bdi00360 Phenylalanine metabolism 3
bdi01230 Biosynthesis of amino acids 2
bdi00040 Pentose and glucuronate interconversions 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820582 829790 833889 103864167 103837220 103842602 106400040 106369862 106349108 107910165 107936555 102610008 102623590 100785414 100805958 100232983 18096744 7495513 11406632 25497603 25500440 101245605 100037489 102603315 107795780 107771928 107760973 9266092 4333399 4327329 100384722 103630138 100193331 123186954 123431503 123431500 123408763 8082830 8062533 8055723 100837364 100837653 100839691
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