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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CCL   CCR-like protein 
 ath-r.7   CCL   CCR-like protein 
 ath-m.9   CCL   CCR-like protein 
 ath-e.2   CCL   CCR-like protein 
 ath-m.4.bio   CCL   CCR-like protein 
 ath-m.4.hor   CCL   CCR-like protein 
 ath-m.4.lig   CCL   CCR-like protein 
 ath-m.4.str   CCL   CCR-like protein 
 ath-m.4.tis   CCL   CCR-like protein 
 bra-r.6   103854302   light-regulated protein 1, chloroplastic 
 bra-r.6   103846290   light-regulated protein-like 
 bna-r.1   125606673   light-regulated protein 1, chloroplastic-like 
 bna-r.1   106415072   light-regulated protein 1, chloroplastic 
 bna-r.1   106402297   light-regulated protein 1, chloroplastic-like 
 ghi-r.1   107898991   light-regulated protein, chloroplastic 
 ghi-r.1   107924345   light-regulated protein 1, chloroplastic 
 ghi-r.1   121228198   light-regulated protein, chloroplastic 
 cit-r.1   102621920   light-regulated protein 1, chloroplastic 
 cit-r.1   102617713   light-regulated protein, chloroplastic 
 gma-u.5   100305960   putative light-regulated protein 1 
 gma-u.5   100816615   light-regulated protein-like 
 vvi-u.5   100245467   light-regulated protein, chloroplastic 
 vvi-u.5   100249844   light-regulated protein 1, chloroplastic 
 mtr-u.5   11436793   light-regulated protein 1, chloroplastic 
 sly-u.5   101268227   light-regulated protein 1, chloroplastic 
 sot-r.1   102582347   light-regulated protein 
 osa-u.5   4326442   light-regulated protein, chloroplastic-like 
 zma-u.5   100281148   uncharacterized LOC100281148 
 tae-r.2   123068693   light-regulated protein, chloroplastic 
 tae-r.2   123077205   light-regulated protein, chloroplastic 
 tae-r.2   123064849   light-regulated protein, chloroplastic-like 
 hvu-r.1   123442733   light-regulated protein, chloroplastic 
 sbi-r.1   110433579   light-regulated protein 
 bdi-r.1   100844175   light-regulated protein, chloroplastic 

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Top 50 coexpressed genes to CCL (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CCL (ath-u.5 coexpression data)

CoexMap"822286"


athCCL | Entrez gene ID : 822286      
Species ath bra bna ghi cit gma vvi mtr sly sot osa zma tae hvu sbi bdi cre nta ppo
Paralog 9 2 3 3 2 2 2 1 1 1 1 1 3 1 1 1 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IEP  
GO CC
GO:0098807 [list] [network] chloroplast thylakoid membrane protein complex  (19 genes)  IMP  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
Protein NP_189308.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_189308.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_189308.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CCL
ath-r.7
for
CCL
ath-m.9
for
CCL
ath-e.2
for
CCL
ath-m.4.bio
for
CCL
ath-m.4.hor
for
CCL
ath-m.4.lig
for
CCL
ath-m.4.str
for
CCL
ath-m.4.tis
for
CCL
bra-r.6
for
103854302
bra-r.6
for
103846290
bna-r.1
for
125606673
bna-r.1
for
106415072
bna-r.1
for
106402297
ghi-r.1
for
107898991
ghi-r.1
for
107924345
ghi-r.1
for
121228198
cit-r.1
for
102621920
cit-r.1
for
102617713
gma-u.5
for
100305960
gma-u.5
for
100816615
vvi-u.5
for
100245467
vvi-u.5
for
100249844
mtr-u.5
for
11436793
sly-u.5
for
101268227
sot-r.1
for
102582347
osa-u.5
for
4326442
zma-u.5
for
100281148
tae-r.2
for
123068693
tae-r.2
for
123077205
tae-r.2
for
123064849
hvu-r.1
for
123442733
sbi-r.1
for
110433579
bdi-r.1
for
100844175


Ortholog ID: 6571
Species ath bra bra bna bna bna ghi ghi ghi cit cit gma gma vvi vvi mtr sly sot osa zma tae tae tae hvu sbi bdi
Symbol CCL LOC103854302 LOC103846290 LOC125606673 LOC106367138 LOC106360370 LOC107898991 LOC107924345 LOC107911743 LOC102621920 LOC102617713 LOC100305960 LOC100816615 LOC100245467 LOC100249844 LOC11436793 LOC101268227 LOC102582347 LOC4326442 LOC100281148 LOC123068693 LOC123077205 LOC123064849 LOC123442733 LOC110433579 LOC100844175
Function* CCR-like protein light-regulated protein 1, chloroplastic light-regulated protein-like light-regulated protein 1, chloroplastic-like light-regulated protein 1, chloroplastic light-regulated protein 1, chloroplastic light-regulated protein, chloroplastic light-regulated protein 1, chloroplastic light-regulated protein 1, chloroplastic light-regulated protein 1, chloroplastic light-regulated protein, chloroplastic putative light-regulated protein 1 light-regulated protein-like light-regulated protein, chloroplastic light-regulated protein 1, chloroplastic light-regulated protein 1, chloroplastic light-regulated protein 1, chloroplastic light-regulated protein light-regulated protein, chloroplastic-like uncharacterized LOC100281148 light-regulated protein, chloroplastic light-regulated protein, chloroplastic light-regulated protein, chloroplastic-like light-regulated protein, chloroplastic light-regulated protein light-regulated protein, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00730 Thiamine metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00620 Pyruvate metabolism 2
sly00640 Propanoate metabolism 2
sly00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822286 103854302 103846290 125606673 106367138 106360370 107898991 107924345 107911743 102621920 102617713 100305960 100816615 100245467 100249844 11436793 101268227 102582347 4326442 100281148 123068693 123077205 123064849 123442733 110433579 100844175
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