ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT3G29240	PPR containing protein (DUF179)
ath-r.7	AT3G29240	PPR containing protein (DUF179)
ath-m.9	AT3G29240	PPR containing protein (DUF179)
ath-e.2	AT3G29240	PPR containing protein (DUF179)
ath-m.4.bio	AT3G29240	PPR containing protein (DUF179)
ath-m.4.hor	AT3G29240	PPR containing protein (DUF179)
ath-m.4.lig	AT3G29240	PPR containing protein (DUF179)
ath-m.4.str	AT3G29240	PPR containing protein (DUF179)
ath-m.4.tis	AT3G29240	PPR containing protein (DUF179)
ath-u.5	AT1G33780	electron transporter, putative (DUF179)
bra-r.6	103854146	UPF0301 protein Plut_0637
bra-r.6	103837208	UPF0301 protein Plut_0637
bra-r.6	103840051	UPF0301 protein Cpha266_0885
bna-r.1	111203363	UPF0301 protein Plut_0637-like
bna-r.1	125603722	UPF0301 protein Plut_0637-like
bna-r.1	125580530	uncharacterized LOC125580530
ghi-r.1	107914031	uncharacterized LOC107914031
ghi-r.1	107897377	UPF0301 protein Cpha266_0885
ghi-r.1	107951344	uncharacterized LOC107951344
cit-r.1	102620824	uncharacterized LOC102620824
cit-r.1	102622977	hypothetical protein
gma-u.5	100797766	UPF0301 protein BF2109
gma-u.5	100796425	UPF0301 protein Cpha266_0885
gma-u.5	100783218	UPF0301 protein BF2109
vvi-u.5	100260279	uncharacterized LOC100260279
vvi-u.5	100261075	uncharacterized LOC100261075
ppo-u.5	7472617	uncharacterized LOC7472617
ppo-u.5	7475754	uncharacterized LOC7475754
ppo-u.5	18104346	uncharacterized LOC18104346
mtr-u.5	11417841	UPF0301 protein BF2109
mtr-u.5	11416264	UPF0301 protein MAB_4928c
sly-u.5	101252045	uncharacterized LOC101252045
sly-u.5	101247689	uncharacterized LOC101247689
sot-r.1	102605491	UPF0301 protein CHU_1773
sot-r.1	102582836	UPF0301 protein TC_0483
nta-r.1	107784942	uncharacterized LOC107784942
nta-r.1	107779038	uncharacterized LOC107779038
nta-r.1	107800101	uncharacterized LOC107800101
osa-u.5	4348336	uncharacterized LOC4348336
osa-u.5	4338823	uncharacterized LOC4338823
osa-u.5	4324886	uncharacterized LOC4324886
zma-u.5	100273474	uncharacterized LOC100273474
zma-u.5	100216654	uncharacterized LOC100216654
tae-r.2	123152406	UPF0301 protein Plut_0637
tae-r.2	123056398	uncharacterized LOC123056398
tae-r.2	123062921	UPF0301 protein Plut_0637
hvu-r.1	123445105	uncharacterized LOC123445105
hvu-r.1	123442726	uncharacterized LOC123442726
hvu-r.1	123412564	uncharacterized LOC123412564
sbi-r.1	8065292	uncharacterized LOC8065292
sbi-r.1	8076972	uncharacterized LOC8076972
sbi-r.1	8063151	UPF0301 protein Cpar_0662
bdi-r.1	100827575	uncharacterized LOC100827575
bdi-r.1	100828069	uncharacterized LOC100828069
cre-r.1	CHLRE_03g189700v5	uncharacterized protein
cre-r.1	CHLRE_08g377950v5	uncharacterized protein
cre-r.1	CHLRE_04g223700v5	uncharacterized protein

Top 50 coexpressed genes to AT3G29240 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G29240 (ath-u.5 coexpression data)

CoexMap"822579"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009532 [list] [network] plastid stroma	(704 genes)	IDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	HDA

GO MF

GO:0005515 [list] [network] protein binding

(5363 genes)

IPI

Protein

NP_566847.1 [sequence] [blastp]
NP_850648.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, nucl 1, cyto 1, E.R. 1, cyto_nucl 1, cyto_E.R. 1	(predict for NP_566847.1)
chlo 8, nucl 1, cyto 1, E.R. 1, cyto_nucl 1, cyto_E.R. 1	(predict for NP_850648.1)

Subcellular
localization
TargetP

chlo 4, other 3	(predict for NP_566847.1)
chlo 4, other 3	(predict for NP_850648.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G29240	ath-r.7 for AT3G29240	ath-m.9 for AT3G29240	ath-e.2 for AT3G29240	ath-m.4.bio for AT3G29240	ath-m.4.hor for AT3G29240	ath-m.4.lig for AT3G29240	ath-m.4.str for AT3G29240	ath-m.4.tis for AT3G29240	ath-u.5 for AT1G33780	bra-r.6 for 103854146	bra-r.6 for 103837208	bra-r.6 for 103840051	bna-r.1 for 111203363	bna-r.1 for 125603722	bna-r.1 for 125580530	ghi-r.1 for 107914031	ghi-r.1 for 107897377	ghi-r.1 for 107951344	cit-r.1 for 102620824	cit-r.1 for 102622977	gma-u.5 for 100797766	gma-u.5 for 100796425	gma-u.5 for 100783218	vvi-u.5 for 100260279	vvi-u.5 for 100261075	ppo-u.5 for 7472617	ppo-u.5 for 7475754	ppo-u.5 for 18104346	mtr-u.5 for 11417841	mtr-u.5 for 11416264	sly-u.5 for 101252045	sly-u.5 for 101247689	sot-r.1 for 102605491	sot-r.1 for 102582836	nta-r.1 for 107784942	nta-r.1 for 107779038	nta-r.1 for 107800101	osa-u.5 for 4348336	osa-u.5 for 4338823	osa-u.5 for 4324886	zma-u.5 for 100273474	zma-u.5 for 100216654	tae-r.2 for 123152406	tae-r.2 for 123056398	tae-r.2 for 123062921	hvu-r.1 for 123445105	hvu-r.1 for 123442726	hvu-r.1 for 123412564	sbi-r.1 for 8065292	sbi-r.1 for 8076972	sbi-r.1 for 8063151	bdi-r.1 for 100827575	bdi-r.1 for 100828069	cre-r.1 for CHLRE_03g189700v5	cre-r.1 for CHLRE_08g377950v5	cre-r.1 for CHLRE_04g223700v5

Ortholog

Ortholog ID: 1752

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

PPR containing protein (DUF179)

electron transporter, putative (DUF179)

UPF0301 protein Plut_0637

UPF0301 protein Cpha266_0885

UPF0301 protein TC_0483

UPF0301 protein Plut_0637-like

UPF0301 protein CHU_1773

uncharacterized LOC106371106

uncharacterized LOC107914031

UPF0301 protein Cpha266_0885

uncharacterized LOC107957641

uncharacterized LOC102620824

hypothetical protein

UPF0301 protein BF2109

UPF0301 protein Cpha266_0885

UPF0301 protein Cag_1601-like

uncharacterized LOC100260279

uncharacterized LOC100261075

uncharacterized LOC7472617

uncharacterized LOC7475754

uncharacterized LOC18104346

UPF0301 protein BF2109

UPF0301 protein MAB_4928c

uncharacterized LOC101252045

uncharacterized LOC101247689

UPF0301 protein CHU_1773

UPF0301 protein TC_0483

uncharacterized LOC107779038

uncharacterized LOC107800101

uncharacterized LOC107793532

uncharacterized LOC4348336

uncharacterized LOC4338823

uncharacterized LOC4324886

uncharacterized LOC100273474

uncharacterized LOC100216654

uncharacterized LOC100272457

UPF0301 protein Plut_0637

uncharacterized LOC123056398

UPF0301 protein Plut_0637

uncharacterized LOC123445105

uncharacterized LOC123442726

uncharacterized LOC123412564

uncharacterized LOC8065292

uncharacterized LOC8076972

UPF0301 protein Cpar_0662

uncharacterized LOC100827575

uncharacterized LOC100828069

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00561	Glycerolipid metabolism	3
ath00566	Sulfoquinovose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04146	Peroxisome	5
bna00860	Porphyrin metabolism	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00053	Ascorbate and aldarate metabolism	2
gma00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	2
ppo00860	Porphyrin metabolism	2
ppo00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	5
sly00710	Carbon fixation by Calvin cycle	4
sly00500	Starch and sucrose metabolism	3
sly00010	Glycolysis / Gluconeogenesis	2
sly00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00561	Glycerolipid metabolism	2
sot00566	Sulfoquinovose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	3
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01250	Biosynthesis of nucleotide sugars	2
nta00566	Sulfoquinovose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	4
nta04141	Protein processing in endoplasmic reticulum	2
nta00566	Sulfoquinovose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00051	Fructose and mannose metabolism	5
nta01200	Carbon metabolism	5
nta00010	Glycolysis / Gluconeogenesis	4
nta00030	Pentose phosphate pathway	4
nta00710	Carbon fixation by Calvin cycle	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00561	Glycerolipid metabolism	3
osa00566	Sulfoquinovose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	9
zma00630	Glyoxylate and dicarboxylate metabolism	6
zma04146	Peroxisome	5
zma00250	Alanine, aspartate and glutamate metabolism	4
zma00260	Glycine, serine and threonine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00600	Sphingolipid metabolism	3
tae04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	5
tae00600	Sphingolipid metabolism	3
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00900	Terpenoid backbone biosynthesis	2
bdi00260	Glycine, serine and threonine metabolism	2
bdi00630	Glyoxylate and dicarboxylate metabolism	2
bdi01200	Carbon metabolism	2
bdi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04136	Autophagy - other	3

Expression

Expression pattern

Entrez Gene ID^*

822579

840269

103837208

103840051

103875092

111203363

106415658

106371106

107914031

107897377

107957641

102620824

102622977

100797766

100796425

100783151

100260279

100261075

7472617

7475754

18104346

11417841

11416264

101252045

101247689

102605491

102582836

107779038

107800101

107793532

4348336

4338823

4324886

100273474

100216654

100272457

123152406

123056398

123071788

123445105

123442726

123412564

8065292

8076972

8063151

100827575

100828069

5717508

66054482

5717883

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	3	3	3	2	3	2	3	2	2	2	3	3	2	3	3	3	2	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G29240 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G29240 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**