ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT3G29760	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
ath-r.7	AT3G29760	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
ath-m.9	AT3G29760	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
ath-e.2	AT3G29760	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
ath-m.4.bio	AT3G29760	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
ath-m.4.hor	AT3G29760	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
ath-m.4.lig	AT3G29760	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
ath-m.4.str	AT3G29760	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
ath-m.4.tis	AT3G29760	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
ath-u.5	AT2G36540	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
ath-u.5	AT2G36550	haloacid dehalogenase-like hydrolase family protein
bra-r.6	103837218	ubiquitin-like domain-containing CTD phosphatase 1
bna-r.1	111197896	uncharacterized FCP1 homology domain-containing protein C1271.03c
bna-r.1	125598287	probable C-terminal domain small phosphatase
ghi-r.1	107941345	ubiquitin-like domain-containing CTD phosphatase 1
ghi-r.1	107923009	probable C-terminal domain small phosphatase
ghi-r.1	107888529	ubiquitin-like domain-containing CTD phosphatase 1
cit-r.1	102629674	uncharacterized LOC102629674
cit-r.1	102611990	uncharacterized LOC102611990
gma-u.5	100806707	uncharacterized LOC100806707
vvi-u.5	100263840	uncharacterized LOC100263840
vvi-u.5	100244680	uncharacterized LOC100244680
ppo-u.5	7469512	uncharacterized LOC7469512
ppo-u.5	18105757	uncharacterized LOC18105757
mtr-u.5	25497548	uncharacterized FCP1 homology domain-containing protein C1271.03c
mtr-u.5	11423844	uncharacterized LOC11423844
mtr-u.5	25499383	uncharacterized LOC25499383
sly-u.5	101257552	uncharacterized LOC101257552
sot-r.1	102600673	uncharacterized LOC102600673
sot-r.1	102587470	uncharacterized LOC102587470
sot-r.1	102597689	uncharacterized LOC102597689
nta-r.1	107816241	uncharacterized LOC107816241
nta-r.1	107768741	uncharacterized LOC107768741
osa-u.5	9267917	uncharacterized LOC9267917
osa-u.5	107277120	flocculation protein FLO11
osa-u.5	4334153	uncharacterized LOC4334153
zma-u.5	103632363	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
zma-u.5	103625877	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
zma-u.5	103648289	probable C-terminal domain small phosphatase
tae-r.2	123045115	uncharacterized LOC123045115
tae-r.2	123188852	splicing factor, arginine/serine-rich 19
tae-r.2	123113361	uncharacterized LOC123113361
hvu-r.1	123426358	uncharacterized LOC123426358
hvu-r.1	123452289	uncharacterized LOC123452289
sbi-r.1	8086224	uncharacterized LOC8086224
sbi-r.1	8063865	uncharacterized LOC8063865
bdi-r.1	100821447	uncharacterized LOC100821447
bdi-r.1	100845524	uncharacterized LOC100845524

Top 50 coexpressed genes to AT3G29760 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G29760 (ath-u.5 coexpression data)

CoexMap"822663"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_001325858.1 [sequence] [blastp]
NP_001325859.1 [sequence] [blastp]
NP_001325860.1 [sequence] [blastp]
NP_001325861.1 [sequence] [blastp]
NP_189619.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto_nucl 4, cyto 3	(predict for NP_001325858.1)
nucl 5, cyto 4, chlo 1	(predict for NP_001325859.1)
nucl 6, cyto 2, chlo 1	(predict for NP_001325860.1)
nucl 5, cyto 4, chlo 1	(predict for NP_001325861.1)
nucl 5, cyto_nucl 4, cyto 3	(predict for NP_189619.2)

Subcellular
localization
TargetP

other 8	(predict for NP_001325858.1)
other 8	(predict for NP_001325859.1)
other 8	(predict for NP_001325860.1)
other 8	(predict for NP_001325861.1)
other 8	(predict for NP_189619.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G29760	ath-r.7 for AT3G29760	ath-m.9 for AT3G29760	ath-e.2 for AT3G29760	ath-m.4.bio for AT3G29760	ath-m.4.hor for AT3G29760	ath-m.4.lig for AT3G29760	ath-m.4.str for AT3G29760	ath-m.4.tis for AT3G29760	ath-u.5 for AT2G36540	ath-u.5 for AT2G36550	bra-r.6 for 103837218	bna-r.1 for 111197896	bna-r.1 for 125598287	ghi-r.1 for 107941345	ghi-r.1 for 107923009	ghi-r.1 for 107888529	cit-r.1 for 102629674	cit-r.1 for 102611990	gma-u.5 for 100806707	vvi-u.5 for 100263840	vvi-u.5 for 100244680	ppo-u.5 for 7469512	ppo-u.5 for 18105757	mtr-u.5 for 25497548	mtr-u.5 for 11423844	mtr-u.5 for 25499383	sly-u.5 for 101257552	sot-r.1 for 102600673	sot-r.1 for 102587470	sot-r.1 for 102597689	nta-r.1 for 107816241	nta-r.1 for 107768741	osa-u.5 for 9267917	osa-u.5 for 107277120	osa-u.5 for 4334153	zma-u.5 for 103632363	zma-u.5 for 103625877	zma-u.5 for 103648289	tae-r.2 for 123045115	tae-r.2 for 123188852	tae-r.2 for 123113361	hvu-r.1 for 123426358	hvu-r.1 for 123452289	sbi-r.1 for 8086224	sbi-r.1 for 8063865	bdi-r.1 for 100821447	bdi-r.1 for 100845524

Ortholog

Ortholog ID: 1697

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

haloacid dehalogenase-like hydrolase family protein

ubiquitin-like domain-containing CTD phosphatase 1

probable C-terminal domain small phosphatase

ubiquitin-like domain-containing CTD phosphatase 1

uncharacterized LOC107911724

uncharacterized LOC102629674

uncharacterized LOC102611990

uncharacterized LOC100806707

uncharacterized LOC100263840

uncharacterized LOC100244680

uncharacterized LOC7463064

uncharacterized LOC18102787

uncharacterized FCP1 homology domain-containing protein C1271.03c

uncharacterized LOC11423844

uncharacterized FCP1 homology domain-containing protein C1271.03c

uncharacterized LOC101257552

uncharacterized LOC101261530

uncharacterized LOC102587470

uncharacterized LOC102597689

ubiquitin-like domain-containing CTD phosphatase 1

uncharacterized LOC107816241

uncharacterized LOC107788657

uncharacterized LOC9267917

flocculation protein FLO11

uncharacterized LOC4334153

Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

probable C-terminal domain small phosphatase

splicing factor, arginine/serine-rich 19

uncharacterized LOC123113361

uncharacterized LOC123105062

uncharacterized LOC123426358

uncharacterized LOC123452289

uncharacterized LOC8086224

uncharacterized LOC8063865

uncharacterized LOC100821447

uncharacterized LOC100845524

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00562	Inositol phosphate metabolism	3
ath04712	Circadian rhythm - plant	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	3
bra03040	Spliceosome	3
bra03050	Proteasome	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00510	N-Glycan biosynthesis	4
ghi00513	Various types of N-glycan biosynthesis	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	7
ghi04382	Cornified envelope formation	5
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00970	Aminoacyl-tRNA biosynthesis	2
sly00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	3
nta03008	Ribosome biogenesis in eukaryotes	2
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03440	Homologous recombination	4
osa03030	DNA replication	4
osa03410	Base excision repair	4
osa03420	Nucleotide excision repair	4
osa03430	Mismatch repair	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03420	Nucleotide excision repair	2
osa03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	3
tae04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

822663

818227

818228

103837218

125598287

107923009

107888529

107911724

102629674

102611990

100806707

100263840

100244680

7463064

18102787

25497548

11423844

25497549

101257552

101261530

102587470

102597689

102597482

107816241

107788657

9267917

107277120

4334153

103632363

103625877

103648289

123188852

123113361

123105062

123426358

123452289

8086224

8063865

100821447

100845524

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	1	2	3	2	1	2	2	3	1	3	2	3	3	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G29760 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G29760 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**