ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT3G44960	shugoshin
ath-r.7	AT3G44960	shugoshin
ath-m.9	AT3G44960	shugoshin
ath-e.2	AT3G44960	shugoshin
ath-m.4.bio	AT3G44960	shugoshin
ath-m.4.hor	AT3G44960	shugoshin
ath-m.4.lig	AT3G44960	shugoshin
ath-m.4.str	AT3G44960	shugoshin
ath-m.4.tis	AT3G44960	shugoshin
ath-u.5	AT3G10440	Shugoshin C terminus
ath-u.5	AT5G04320	Shugoshin C terminus
bra-r.6	103847557	SHUGOSHIN 1
bra-r.6	103855564	SHUGOSHIN 2
bna-r.1	106351144	SHUGOSHIN 1
bna-r.1	106372534	SHUGOSHIN 2
ghi-r.1	107958547	shugoshin-1
ghi-r.1	107957417	SHUGOSHIN 2
ghi-r.1	107939521	SHUGOSHIN 1
cit-r.1	102625934	SHUGOSHIN 2
cit-r.1	102629425	SHUGOSHIN 2
gma-u.5	102665348	shugoshin-1
gma-u.5	100801538	shugoshin-1
vvi-u.5	100243057	shugoshin-1
vvi-u.5	100246085	SHUGOSHIN 2
ppo-u.5	7479850	shugoshin-1
ppo-u.5	18098245	SHUGOSHIN 2
mtr-u.5	11407170	shugoshin-1
sly-u.5	101264280	SHUGOSHIN 2
sly-u.5	101261484	SHUGOSHIN 2
sot-r.1	102579379	shugoshin-1
sot-r.1	102603395	uncharacterized LOC102603395
nta-r.1	107762740	SHUGOSHIN 1-like
nta-r.1	107791653	SHUGOSHIN 2
nta-r.1	107787827	uncharacterized LOC107787827
osa-u.5	4348802	shugoshin-1-like
zma-u.5	100284141	shugoshin-1
tae-r.2	123180959	shugoshin-1
tae-r.2	123090246	shugoshin-1
tae-r.2	123044727	shugoshin-1
hvu-r.1	123447312	shugoshin-1-like
sbi-r.1	8070526	shugoshin-1
bdi-r.1	100823493	shugoshin-1

Annotation

functional annotation

Function

shugoshin

KEGG

GO BP

GO:0045144 [list] [network] meiotic sister chromatid segregation	(4 genes)	IEA
GO:0034090 [list] [network] maintenance of meiotic sister chromatid cohesion	(5 genes)	IEA

GO CC

GO:0000775 [list] [network] chromosome, centromeric region	(33 genes)	IEA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

Protein

NP_001319686.1 [sequence] [blastp]
NP_001327664.1 [sequence] [blastp]
NP_001327665.1 [sequence] [blastp]
NP_001327666.1 [sequence] [blastp]
NP_001327667.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 1, mito 1, chlo_mito 1	(predict for NP_001319686.1)
nucl 6, chlo 1, mito 1, chlo_mito 1	(predict for NP_001327664.1)
nucl 6, mito 3, cysk_nucl 3, nucl_plas 3	(predict for NP_001327665.1)
nucl 7, cyto 1, mito 1, extr 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_001327666.1)
nucl 6, chlo 1, mito 1, chlo_mito 1	(predict for NP_001327667.1)

Subcellular
localization
TargetP

mito 5, other 3	(predict for NP_001319686.1)
mito 5, other 3	(predict for NP_001327664.1)
other 5	(predict for NP_001327665.1)
other 7	(predict for NP_001327666.1)
mito 5, other 3	(predict for NP_001327667.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G44960	ath-r.7 for AT3G44960	ath-m.9 for AT3G44960	ath-e.2 for AT3G44960	ath-m.4.bio for AT3G44960	ath-m.4.hor for AT3G44960	ath-m.4.lig for AT3G44960	ath-m.4.str for AT3G44960	ath-m.4.tis for AT3G44960	ath-u.5 for AT3G10440	ath-u.5 for AT5G04320	bra-r.6 for 103847557	bra-r.6 for 103855564	bna-r.1 for 106351144	bna-r.1 for 106372534	ghi-r.1 for 107958547	ghi-r.1 for 107957417	ghi-r.1 for 107939521	cit-r.1 for 102625934	cit-r.1 for 102629425	gma-u.5 for 102665348	gma-u.5 for 100801538	vvi-u.5 for 100243057	vvi-u.5 for 100246085	ppo-u.5 for 7479850	ppo-u.5 for 18098245	mtr-u.5 for 11407170	sly-u.5 for 101264280	sly-u.5 for 101261484	sot-r.1 for 102579379	sot-r.1 for 102603395	nta-r.1 for 107762740	nta-r.1 for 107791653	nta-r.1 for 107787827	osa-u.5 for 4348802	zma-u.5 for 100284141	tae-r.2 for 123180959	tae-r.2 for 123090246	tae-r.2 for 123044727	hvu-r.1 for 123447312	sbi-r.1 for 8070526	bdi-r.1 for 100823493

Please wait a moment.

Ortholog

Ortholog ID: 3573

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

shugoshin

Shugoshin C terminus

SHUGOSHIN 1

SHUGOSHIN 2

SHUGOSHIN 1

shugoshin-1

SHUGOSHIN 2

shugoshin-1

SHUGOSHIN 2

shugoshin-1

SHUGOSHIN 2

shugoshin-1

SHUGOSHIN 2

shugoshin-1

uncharacterized LOC102603395

SHUGOSHIN 1-like

SHUGOSHIN 2

uncharacterized LOC107787827

shugoshin-1-like

shugoshin-1

shugoshin-1-like

shugoshin-1

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04148	Efferocytosis	2
ath04517	IgSF CAM signaling	2
ath04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03440	Homologous recombination	2
ath04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	3
bra03410	Base excision repair	2
bra03420	Nucleotide excision repair	2
bra03430	Mismatch repair	2
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04145	Phagosome	2
ghi04148	Efferocytosis	2
ghi04517	IgSF CAM signaling	2
ghi04518	Integrin signaling	2
ghi04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04814	Motor proteins	3
gma00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2
gma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04814	Motor proteins	3
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	16
nta03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00520	Amino sugar and nucleotide sugar metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

823631

820208

830311

103847557

103855564

106351144

106379396

107958547

107957417

107904159

102625934

102629425

102665348

100801538

100243057

100246085

7479850

18098245

7463463

11407170

101264280

101261484

102579379

102603395

107762740

107791653

107787827

4348802

100284141

123180959

123090246

123044727

123447312

8070526

100823493

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT3G44960 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G44960 (ath-u.5 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	2	2	3	2	2	2	2	1	2	2	3	1	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G44960 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G44960 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**