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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PDF2   protodermal factor 2 
 ath-r.7   PDF2   protodermal factor 2 
 ath-m.9   PDF2   protodermal factor 2 
 ath-e.2   PDF2   protodermal factor 2 
 ath-m.4.bio   PDF2   protodermal factor 2 
 ath-m.4.hor   PDF2   protodermal factor 2 
 ath-m.4.lig   PDF2   protodermal factor 2 
 ath-m.4.str   PDF2   protodermal factor 2 
 ath-m.4.tis   PDF2   protodermal factor 2 
 ath-u.5   ATML1   Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 
 ath-u.5   HDG2   homeodomain GLABROUS 2 
 gma-u.5   100782240   homeobox-leucine zipper protein MERISTEM L1 
 gma-u.5   100782260   homeobox-leucine zipper protein HDG2 
 gma-u.5   100790101   homeobox-leucine zipper protein HDG2 
 vvi-u.5   100264009   homeobox-leucine zipper protein MERISTEM L1 
 vvi-u.5   100261842   homeobox-leucine zipper protein HDG2 
 ppo-u.5   7462050   homeobox-leucine zipper protein HDG2 
 ppo-u.5   7489907   homeobox-leucine zipper protein HDG2 
 mtr-u.5   11441377   homeobox-leucine zipper protein HDG2 
 mtr-u.5   11417538   homeobox-leucine zipper protein HDG2 
 sly-u.5   101259395   homeobox-leucine zipper protein PROTODERMAL FACTOR 2 
 sly-u.5   101265620   homeobox-leucine zipper protein MERISTEM L1-like 
 osa-u.5   4337074   homeobox-leucine zipper protein ROC2-like 
 osa-u.5   4344614   homeobox-leucine zipper protein ROC7-like 
 osa-u.5   4344832   homeobox-leucine zipper protein ROC1-like 
 zma-u.5   100383453   Homeodomain leucine zipper family IV protein 
 zma-u.5   103641332   homeobox-leucine zipper protein ROC7 
 zma-u.5   542010   outer cell layer5a 

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Top 50 coexpressed genes to PDF2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PDF2 (ath-u.5 coexpression data)

CoexMap"825828"


athPDF2 | Entrez gene ID : 825828      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 11 3 2 2 2 2 3 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0048497 [list] [network] maintenance of floral organ identity  (8 genes)  IGI IMP  
GO:2000033 [list] [network] regulation of seed dormancy process  (14 genes)  IEP  
GO:0048825 [list] [network] cotyledon development  (61 genes)  IGI  
GO:0010029 [list] [network] regulation of seed germination  (105 genes)  IEP  
GO:0009845 [list] [network] seed germination  (111 genes)  IMP  
GO:0090627 [list] [network] plant epidermal cell differentiation  (198 genes)  IMP  
GO:0030154 [list] [network] cell differentiation  (627 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (47 genes)  IEA  
GO:0008289 [list] [network] lipid binding  (245 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001329475.1 [sequence] [blastp]
NP_567274.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  vacu 1  (predict for NP_001329475.1)
nucl 9,  chlo 1,  vacu 1  (predict for NP_567274.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001329475.1)
other 8  (predict for NP_567274.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PDF2

.
ath-r.7
for
PDF2

.
ath-m.9
for
PDF2

.
ath-e.2
for
PDF2

.
ath-m.4.bio
for
PDF2

.
ath-m.4.hor
for
PDF2

.
ath-m.4.lig
for
PDF2

.
ath-m.4.str
for
PDF2

.
ath-m.4.tis
for
PDF2

.
ath-u.5
for
ATML1

.
ath-u.5
for
HDG2

.
gma-u.5
for
100782240

.
gma-u.5
for
100782260

.
gma-u.5
for
100790101

.
vvi-u.5
for
100264009

.
vvi-u.5
for
100261842

.
ppo-u.5
for
7462050

.
ppo-u.5
for
7489907

.
mtr-u.5
for
11441377

.
mtr-u.5
for
11417538

.
sly-u.5
for
101259395

.
sly-u.5
for
101265620

.
osa-u.5
for
4337074

.
osa-u.5
for
4344614

.
osa-u.5
for
4344832

.
zma-u.5
for
100383453

.
zma-u.5
for
103641332

.
zma-u.5
for
542010

.


Ortholog ID: 1242
Species ath ath gma gma sly osa osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot cit cit bdi bdi nta nta
Symbol HDG2 ATML1 LOC100797992 LOC100809556 LOC101259395 LOC4344832 LOC4344614 LOC118475029 LOC542010 LOC103843620 LOC100264009 LOC100261842 LOC7489907 LOC7462050 LOC11417538 LOC11441377 LOC123161615 LOC123054665 LOC123427922 LOC123407806 LOC107887397 LOC107937865 LOC106371077 LOC106411016 LOC8066825 LOC8071117 LOC102591747 LOC102613029 LOC102631422 LOC100843786 LOC100829867 LOC107826459 LOC107806765
Function* homeodomain GLABROUS 2 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein PROTODERMAL FACTOR 2 homeobox-leucine zipper protein ROC1-like homeobox-leucine zipper protein ROC7-like homeobox-leucine zipper protein ROC1-like outer cell layer5a homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein MERISTEM L1 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein ROC7 homeobox-leucine zipper protein ROC2 homeobox-leucine zipper protein ROC2-like homeobox-leucine zipper protein ROC7-like homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein PROTODERMAL FACTOR 2 homeobox-leucine zipper protein ROC2 homeobox-leucine zipper protein ROC1 homeobox-leucine zipper protein MERISTEM L1-like homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein MERISTEM L1-like homeobox-leucine zipper protein ROC1 homeobox-leucine zipper protein ROC2 homeobox-leucine zipper protein PROTODERMAL FACTOR 2 homeobox-leucine zipper protein MERISTEM L1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath02010 ABC transporters 4
ath00062 Fatty acid elongation 2
ath04626 Plant-pathogen interaction 2
ath04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00062 Fatty acid elongation 4
ath04626 Plant-pathogen interaction 4
ath02010 ABC transporters 4
ath00561 Glycerolipid metabolism 2
ath00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma02010 ABC transporters 4
gma04981 Folate transport and metabolism 4
gma00062 Fatty acid elongation 3
gma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma02010 ABC transporters 3
gma04981 Folate transport and metabolism 3
gma00062 Fatty acid elongation 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra02010 ABC transporters 2
bra04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00062 Fatty acid elongation 2
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00073 Cutin, suberine and wax biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00073 Cutin, suberine and wax biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00062 Fatty acid elongation 3
mtr04626 Plant-pathogen interaction 3
mtr02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00062 Fatty acid elongation 4
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu02010 ABC transporters 2
hvu04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu02010 ABC transporters 2
hvu04981 Folate transport and metabolism 2
hvu04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00062 Fatty acid elongation 2
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00062 Fatty acid elongation 6
bdi04626 Plant-pathogen interaction 6
bdi02010 ABC transporters 3
bdi04981 Folate transport and metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00062 Fatty acid elongation 4
bdi04626 Plant-pathogen interaction 4
bdi02010 ABC transporters 3
bdi04981 Folate transport and metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839256 828263 100797992 100809556 101259395 4344832 4344614 118475029 542010 103843620 100264009 100261842 7489907 7462050 11417538 11441377 123161615 123054665 123427922 123407806 107887397 107937865 106371077 106411016 8066825 8071117 102591747 102613029 102631422 100843786 100829867 107826459 107806765
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