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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RHF1A   RING-H2 group F1A 
 ath-r.7   RHF1A   RING-H2 group F1A 
 ath-m.9   RHF1A   RING-H2 group F1A 
 ath-e.2   RHF1A   RING-H2 group F1A 
 ath-m.4.bio   RHF1A   RING-H2 group F1A 
 ath-m.4.hor   RHF1A   RING-H2 group F1A 
 ath-m.4.lig   RHF1A   RING-H2 group F1A 
 ath-m.4.str   RHF1A   RING-H2 group F1A 
 ath-m.4.tis   RHF1A   RING-H2 group F1A 
 gma-u.5   100775754   E3 ubiquitin-protein ligase RHF1A 
 gma-u.5   100785684   E3 ubiquitin-protein ligase RHF1A 
 gma-u.5   100790134   E3 ubiquitin-protein ligase RHF1A 
 vvi-u.5   100240814   E3 ubiquitin-protein ligase RHF1A 
 ppo-u.5   7459040   E3 ubiquitin-protein ligase RHF1A 
 ppo-u.5   7471500   E3 ubiquitin-protein ligase RHF1A 
 mtr-u.5   25486117   E3 ubiquitin-protein ligase RHF1A 
 sly-u.5   101251028   E3 ubiquitin-protein ligase RHF1A 

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Top 50 coexpressed genes to RHF1A (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RHF1A (ath-u.5 coexpression data)

CoexMap"827062"


athRHF1A | Entrez gene ID : 827062      
Species ath gma vvi ppo mtr sly sot hvu tae cit sbi zma ghi cre bna nta bdi bra osa
Paralog 9 3 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010498 [list] [network] proteasomal protein catabolic process  (49 genes)  IDA  
GO:0055046 [list] [network] microgametogenesis  (63 genes)  IGI  
GO:0009561 [list] [network] megagametogenesis  (80 genes)  IGI  
GO:0051726 [list] [network] regulation of cell cycle  (135 genes)  IGI  
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IDA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_193158.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  cyto 1  (predict for NP_193158.2)
Subcellular
localization
TargetP
chlo 5  (predict for NP_193158.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RHF1A

.
ath-r.7
for
RHF1A

.
ath-m.9
for
RHF1A

.
ath-e.2
for
RHF1A

.
ath-m.4.bio
for
RHF1A

.
ath-m.4.hor
for
RHF1A

.
ath-m.4.lig
for
RHF1A

.
ath-m.4.str
for
RHF1A

.
ath-m.4.tis
for
RHF1A

.
gma-u.5
for
100775754

.
gma-u.5
for
100785684

.
gma-u.5
for
100790134

.
vvi-u.5
for
100240814

.
ppo-u.5
for
7459040

.
ppo-u.5
for
7471500

.
mtr-u.5
for
25486117

.
sly-u.5
for
101251028

.


Ortholog ID: 12665
Species ath gma gma sly bra vvi ppo ppo mtr ghi bna bna sot cit nta nta
Symbol RHF1A LOC100785684 LOC100805449 LOC101251028 LOC103835195 LOC100240814 LOC7471500 LOC7459040 LOC25486117 LOC107941837 LOC106439725 LOC106361560 LOC102583410 LOC102611424 LOC107786361 LOC107802070
Function* RING-H2 group F1A E3 ubiquitin-protein ligase RHF1A E3 ubiquitin-protein ligase RHF1A E3 ubiquitin-protein ligase RHF1A E3 ubiquitin-protein ligase RHF1A E3 ubiquitin-protein ligase RHF1A E3 ubiquitin-protein ligase RHF1A E3 ubiquitin-protein ligase RHF1A E3 ubiquitin-protein ligase RHF1A E3 ubiquitin-protein ligase RHF1A E3 ubiquitin-protein ligase RHF1A E3 ubiquitin-protein ligase RHF1A E3 ubiquitin-protein ligase RHF1A-like E3 ubiquitin-protein ligase RHF1A-like E3 ubiquitin-protein ligase RHF1A-like E3 ubiquitin-protein ligase RHF1A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00510 N-Glycan biosynthesis 6
gma00513 Various types of N-glycan biosynthesis 6
gma04141 Protein processing in endoplasmic reticulum 6
gma00500 Starch and sucrose metabolism 3
gma00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00520 Amino sugar and nucleotide sugar metabolism 2
ppo01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00270 Cysteine and methionine metabolism 7
mtr00670 One carbon pool by folate 6
mtr01230 Biosynthesis of amino acids 5
mtr01240 Biosynthesis of cofactors 3
mtr00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 7
ghi04120 Ubiquitin mediated proteolysis 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 3
nta03083 Polycomb repressive complex 2
nta04141 Protein processing in endoplasmic reticulum 2
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 2
nta04120 Ubiquitin mediated proteolysis 2
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827062 100785684 100805449 101251028 103835195 100240814 7471500 7459040 25486117 107941837 106439725 106361560 102583410 102611424 107786361 107802070
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