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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PMS1   DNA mismatch repair protein 
 ath-r.7   PMS1   DNA mismatch repair protein 
 ath-m.9   PMS1   DNA mismatch repair protein 
 ath-e.2   PMS1   DNA mismatch repair protein 
 ath-m.4.bio   PMS1   DNA mismatch repair protein 
 ath-m.4.hor   PMS1   DNA mismatch repair protein 
 ath-m.4.lig   PMS1   DNA mismatch repair protein 
 ath-m.4.str   PMS1   DNA mismatch repair protein 
 ath-m.4.tis   PMS1   DNA mismatch repair protein 
 bra-r.6   103868208   DNA mismatch repair protein PMS1 
 bna-r.1   125586411   DNA mismatch repair protein PMS1-like 
 bna-r.1   106399800   DNA mismatch repair protein PMS1-like 
 bna-r.1   106348839   DNA mismatch repair protein PMS1-like 
 ghi-r.1   107946086   DNA mismatch repair protein PMS1 
 ghi-r.1   107931240   DNA mismatch repair protein PMS1 
 cit-r.1   102625172   DNA mismatch repair protein PMS1 
 gma-u.5   100802535   DNA mismatch repair protein PMS1 
 gma-u.5   100793891   DNA mismatch repair protein PMS1 
 vvi-u.5   100255596   DNA mismatch repair protein PMS1 
 ppo-u.5   7457943   DNA mismatch repair protein PMS1 
 mtr-u.5   11414900   DNA mismatch repair protein PMS1 
 sly-u.5   101258001   DNA mismatch repair protein PMS1 
 sot-r.1   102596485   DNA mismatch repair protein PMS1 
 nta-r.1   107832312   DNA mismatch repair protein PMS1-like 
 nta-r.1   107818778   DNA mismatch repair protein PMS1 
 nta-r.1   107787641   DNA mismatch repair protein PMS1 
 osa-u.5   4329835   DNA mismatch repair protein PMS1 
 zma-u.5   103653697   DNA mismatch repair protein PMS1 
 tae-r.2   123127556   DNA mismatch repair protein PMS1 
 tae-r.2   123137302   DNA mismatch repair protein PMS1 
 tae-r.2   123144674   DNA mismatch repair protein PMS1 
 hvu-r.1   123401073   DNA mismatch repair protein PMS1 
 sbi-r.1   8055441   DNA mismatch repair protein PMS1 
 bdi-r.1   100824722   DNA mismatch repair protein PMS1 
 cre-r.1   CHLRE_04g227000v5   uncharacterized protein 

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Top 50 coexpressed genes to PMS1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PMS1 (ath-u.5 coexpression data)

CoexMap"827997"


athPMS1 | Entrez gene ID : 827997      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 1 1 1 1 3 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03430 [list] [network] Mismatch repair (32 genes)
ath03460 [list] [network] Fanconi anemia pathway (46 genes)
GO BP
GO:0006298 [list] [network] mismatch repair  (12 genes)  IMP  
GO:0006310 [list] [network] DNA recombination  (113 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO:0048316 [list] [network] seed development  (775 genes)  IMP  
GO:0010154 [list] [network] fruit development  (807 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IC ISM  
GO MF
Protein NP_001329304.1 [sequence] [blastp]
NP_001329305.1 [sequence] [blastp]
NP_001329306.1 [sequence] [blastp]
NP_567236.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 2,  cyto 1,  mito 1,  cysk 1  (predict for NP_001329304.1)
nucl 5,  chlo 2,  cyto 1,  chlo_mito 1  (predict for NP_001329305.1)
chlo 4,  nucl 4,  cysk 1  (predict for NP_001329306.1)
nucl 4,  chlo 4,  cysk 1  (predict for NP_567236.1)
Subcellular
localization
TargetP
other 4  (predict for NP_001329304.1)
other 4  (predict for NP_001329305.1)
chlo 6,  other 3  (predict for NP_001329306.1)
chlo 6,  other 3  (predict for NP_567236.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PMS1
ath-r.7
for
PMS1
ath-m.9
for
PMS1
ath-e.2
for
PMS1
ath-m.4.bio
for
PMS1
ath-m.4.hor
for
PMS1
ath-m.4.lig
for
PMS1
ath-m.4.str
for
PMS1
ath-m.4.tis
for
PMS1
bra-r.6
for
103868208
bna-r.1
for
125586411
bna-r.1
for
106399800
bna-r.1
for
106348839
ghi-r.1
for
107946086
ghi-r.1
for
107931240
cit-r.1
for
102625172
gma-u.5
for
100802535
gma-u.5
for
100793891
vvi-u.5
for
100255596
ppo-u.5
for
7457943
mtr-u.5
for
11414900
sly-u.5
for
101258001
sot-r.1
for
102596485
nta-r.1
for
107832312
nta-r.1
for
107818778
nta-r.1
for
107787641
osa-u.5
for
4329835
zma-u.5
for
103653697
tae-r.2
for
123127556
tae-r.2
for
123137302
tae-r.2
for
123144674
hvu-r.1
for
123401073
sbi-r.1
for
8055441
bdi-r.1
for
100824722
cre-r.1
for
CHLRE_04g227000v5


Ortholog ID: 9033
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol PMS1 LOC103868208 LOC125586411 LOC106399800 LOC106348839 LOC107946086 LOC107931240 LOC102625172 LOC100802535 LOC100793891 LOC100255596 LOC7457943 LOC11414900 LOC101258001 LOC102596485 LOC107832312 LOC107818778 LOC107787641 LOC4329835 LOC103653697 LOC123127556 LOC123137302 LOC123144674 LOC123401073 LOC8055441 LOC100824722 CHLRE_04g227000v5
Function* DNA mismatch repair protein DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1-like DNA mismatch repair protein PMS1-like DNA mismatch repair protein PMS1-like DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1-like DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 4
ath03430 Mismatch repair 3
ath03410 Base excision repair 3
ath03450 Non-homologous end-joining 3
ath03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 6
bra03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 14
bna03430 Mismatch repair 3
bna03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 14
bna03430 Mismatch repair 3
bna03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 14
bna03430 Mismatch repair 3
bna03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03430 Mismatch repair 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 2
ghi03430 Mismatch repair 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 2
gma03460 Fanconi anemia pathway 2
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 5
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03410 Base excision repair 2
vvi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03430 Mismatch repair 3
ppo03460 Fanconi anemia pathway 2
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 5
mtr04120 Ubiquitin mediated proteolysis 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 8
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 3
nta03460 Fanconi anemia pathway 3
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 3
nta03460 Fanconi anemia pathway 3
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 3
nta03460 Fanconi anemia pathway 3
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03430 Mismatch repair 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03430 Mismatch repair 2
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03430 Mismatch repair 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu03040 Spliceosome 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
bdi03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827997 103868208 125586411 106399800 106348839 107946086 107931240 102625172 100802535 100793891 100255596 7457943 11414900 101258001 102596485 107832312 107818778 107787641 4329835 103653697 123127556 123137302 123144674 123401073 8055441 100824722 5717917
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