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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT4G23910   uncharacterized protein 
 ath-r.7   AT4G23910   uncharacterized protein 
 ath-m.9   AT4G23910   uncharacterized protein 
 ath-e.2   AT4G23910   uncharacterized protein 
 ath-m.4.bio   AT4G23910   uncharacterized protein 
 ath-m.4.hor   AT4G23910   uncharacterized protein 
 ath-m.4.lig   AT4G23910   uncharacterized protein 
 ath-m.4.str   AT4G23910   uncharacterized protein 
 ath-m.4.tis   AT4G23910   uncharacterized protein 
 ath-u.5   AT4G10970   ribosome maturation factor 
 bra-r.6   103861539   uncharacterized LOC103861539 
 bra-r.6   103858585   uncharacterized LOC103858585 
 bna-r.1   106375996   uncharacterized LOC106375996 
 bna-r.1   106388544   uncharacterized LOC106388544 
 ghi-r.1   107896458   uncharacterized LOC107896458 
 ghi-r.1   107924225   uncharacterized LOC107924225 
 cit-r.1   102607732   uncharacterized LOC102607732 
 gma-u.5   102659628   uncharacterized LOC102659628 
 gma-u.5   100815497   uncharacterized LOC100815497 
 vvi-u.5   100241044   uncharacterized LOC100241044 
 ppo-u.5   7497849   uncharacterized LOC7497849 
 ppo-u.5   7467085   uncharacterized LOC7467085 
 mtr-u.5   25502180   uncharacterized LOC25502180 
 sly-u.5   101260556   uncharacterized LOC101260556 
 sot-r.1   102583976   uncharacterized LOC102583976 
 nta-r.1   107816393   uncharacterized LOC107816393 
 nta-r.1   107798357   uncharacterized LOC107798357 
 osa-u.5   4345412   uncharacterized LOC4345412 
 zma-u.5   100192649   uncharacterized LOC100192649 
 zma-u.5   100193327   uncharacterized LOC100193327 
 tae-r.2   123145307   uncharacterized LOC123145307 
 tae-r.2   123138022   uncharacterized LOC123138022 
 tae-r.2   123128204   uncharacterized LOC123128204 
 hvu-r.1   123401912   uncharacterized LOC123401912 
 sbi-r.1   8069862   uncharacterized LOC8069862 
 bdi-r.1   100829418   uncharacterized LOC100829418 

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Top 50 coexpressed genes to AT4G23910 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G23910 (ath-u.5 coexpression data)

CoexMap"828491"


athAT4G23910 | Entrez gene ID : 828491      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 2 2 1 2 1 2 1 1 1 2 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006406 [list] [network] mRNA export from nucleus  (17 genes)  IGI  
GO CC
GO:0005730 [list] [network] nucleolus  (394 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO MF
GO:0003727 [list] [network] single-stranded RNA binding  (56 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190818.1 [sequence] [blastp]
NP_194122.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for NP_001190818.1)
nucl 6,  cyto 4  (predict for NP_194122.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001190818.1)
other 9  (predict for NP_194122.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT4G23910
ath-r.7
for
AT4G23910
ath-m.9
for
AT4G23910
ath-e.2
for
AT4G23910
ath-m.4.bio
for
AT4G23910
ath-m.4.hor
for
AT4G23910
ath-m.4.lig
for
AT4G23910
ath-m.4.str
for
AT4G23910
ath-m.4.tis
for
AT4G23910
ath-u.5
for
AT4G10970
bra-r.6
for
103861539
bra-r.6
for
103858585
bna-r.1
for
106375996
bna-r.1
for
106388544
ghi-r.1
for
107896458
ghi-r.1
for
107924225
cit-r.1
for
102607732
gma-u.5
for
102659628
gma-u.5
for
100815497
vvi-u.5
for
100241044
ppo-u.5
for
7497849
ppo-u.5
for
7467085
mtr-u.5
for
25502180
sly-u.5
for
101260556
sot-r.1
for
102583976
nta-r.1
for
107816393
nta-r.1
for
107798357
osa-u.5
for
4345412
zma-u.5
for
100192649
zma-u.5
for
100193327
tae-r.2
for
123145307
tae-r.2
for
123138022
tae-r.2
for
123128204
hvu-r.1
for
123401912
sbi-r.1
for
8069862
bdi-r.1
for
100829418


Ortholog ID: 6601
Species ath ath bra bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol AT4G23910 AT4G10970 LOC103861539 LOC103858585 LOC106375996 LOC106388544 LOC107924225 LOC107890703 LOC102607732 LOC102659628 LOC100815497 LOC100241044 LOC7497849 LOC7467085 LOC25502180 LOC101260556 LOC102583976 LOC107816393 LOC107798357 LOC4345412 LOC100192649 LOC100193327 LOC123145307 LOC123138022 LOC123128204 LOC123401912 LOC8069862 LOC100829418
Function* uncharacterized protein ribosome maturation factor uncharacterized LOC103861539 uncharacterized LOC103858585 uncharacterized LOC106375996 uncharacterized LOC106388544 uncharacterized LOC107924225 uncharacterized LOC107890703 uncharacterized LOC102607732 uncharacterized LOC102659628 uncharacterized LOC100815497 uncharacterized LOC100241044 uncharacterized LOC7497849 uncharacterized LOC7467085 uncharacterized LOC25502180 uncharacterized LOC101260556 uncharacterized LOC102583976 uncharacterized LOC107816393 uncharacterized LOC107798357 uncharacterized LOC4345412 uncharacterized LOC100192649 uncharacterized LOC100193327 uncharacterized LOC123145307 uncharacterized LOC123138022 uncharacterized LOC123128204 uncharacterized LOC123401912 uncharacterized LOC8069862 uncharacterized LOC100829418
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 3
bna03040 Spliceosome 3
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03018 RNA degradation 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03050 Proteasome 5
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
ppo03015 mRNA surveillance pathway 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 5
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 4
osa03013 Nucleocytoplasmic transport 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828491 826698 103861539 103858585 106375996 106388544 107924225 107890703 102607732 102659628 100815497 100241044 7497849 7467085 25502180 101260556 102583976 107816393 107798357 4345412 100192649 100193327 123145307 123138022 123128204 123401912 8069862 100829418
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