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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   EX1   UvrB/UvrC domain protein (DUF3506) 
 ath-r.7   EX1   UvrB/UvrC domain protein (DUF3506) 
 ath-m.9   EX1   UvrB/UvrC domain protein (DUF3506) 
 ath-e.2   EX1   UvrB/UvrC domain protein (DUF3506) 
 ath-m.4.bio   EX1   UvrB/UvrC domain protein (DUF3506) 
 ath-m.4.hor   EX1   UvrB/UvrC domain protein (DUF3506) 
 ath-m.4.lig   EX1   UvrB/UvrC domain protein (DUF3506) 
 ath-m.4.str   EX1   UvrB/UvrC domain protein (DUF3506) 
 ath-m.4.tis   EX1   UvrB/UvrC domain protein (DUF3506) 
 ath-u.5   EX2   UvrB/UvrC domain protein (DUF3506) 
 bra-r.6   103834465   protein EXECUTER 1, chloroplastic 
 bra-r.6   103835390   protein EXECUTER 2, chloroplastic 
 bra-r.6   103862250   protein EXECUTER 1, chloroplastic 
 bna-r.1   125590163   protein EXECUTER 1, chloroplastic-like 
 bna-r.1   106367905   protein EXECUTER 2, chloroplastic-like 
 bna-r.1   106405956   protein EXECUTER 1, chloroplastic 
 ghi-r.1   107898780   protein EXECUTER 1, chloroplastic 
 ghi-r.1   107920344   protein EXECUTER 1, chloroplastic 
 ghi-r.1   107939298   protein EXECUTER 2, chloroplastic 
 cit-r.1   102628221   protein EXECUTER 1, chloroplastic 
 cit-r.1   102616290   protein EXECUTER 2, chloroplastic 
 gma-u.5   100817365   protein EXECUTER 1, chloroplastic 
 gma-u.5   100813487   protein EXECUTER 1, chloroplastic 
 gma-u.5   100787668   protein EXECUTER 1, chloroplastic 
 vvi-u.5   100262100   protein EXECUTER 2, chloroplastic 
 ppo-u.5   7483492   protein EXECUTER 2, chloroplastic 
 ppo-u.5   7457728   protein EXECUTER 2, chloroplastic 
 ppo-u.5   7472526   protein EXECUTER 1, chloroplastic 
 mtr-u.5   11410418   protein EXECUTER 1, chloroplastic 
 mtr-u.5   11432685   protein EXECUTER 2, chloroplastic 
 sly-u.5   101253794   protein EXECUTER 2, chloroplastic 
 sly-u.5   101268434   protein EXECUTER 1, chloroplastic 
 sot-r.1   102589029   protein EXECUTER 1, chloroplastic 
 nta-r.1   107806476   protein EXECUTER 2, chloroplastic 
 nta-r.1   107827941   protein EXECUTER 1, chloroplastic 
 nta-r.1   107822654   protein EXECUTER 2, chloroplastic 
 osa-u.5   4326159   protein EXECUTER 2, chloroplastic-like 
 osa-u.5   4348941   protein EXECUTER 1, chloroplastic-like 
 zma-u.5   103626161   protein EXECUTER 2, chloroplastic 
 zma-u.5   103640880   protein EXECUTER 2, chloroplastic 
 zma-u.5   103643442   protein EXECUTER 1, chloroplastic 
 tae-r.2   123181120   protein EXECUTER 1, chloroplastic 
 tae-r.2   123046406   protein EXECUTER 1, chloroplastic 
 tae-r.2   123068149   protein EXECUTER 2, chloroplastic 
 hvu-r.1   123431696   protein EXECUTER 1, chloroplastic 
 hvu-r.1   123442342   protein EXECUTER 2, chloroplastic 
 sbi-r.1   8079090   protein EXECUTER 2, chloroplastic 
 sbi-r.1   110437371   protein EXECUTER 1, chloroplastic 
 bdi-r.1   100830502   protein EXECUTER 2, chloroplastic 
 bdi-r.1   100822878   protein EXECUTER 1, chloroplastic 
 cre-r.1   CHLRE_03g163500v5   uncharacterized protein 

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Top 50 coexpressed genes to EX1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EX1 (ath-u.5 coexpression data)

CoexMap"829504"


athEX1 | Entrez gene ID : 829504      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 2 3 1 3 2 2 1 3 2 3 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010343 [list] [network] singlet oxygen-mediated programmed cell death  (5 genes)  IGI  
GO:0000304 [list] [network] response to singlet oxygen  (14 genes)  IGI  
GO CC
GO:0042651 [list] [network] thylakoid membrane  (348 genes)  IDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001328575.1 [sequence] [blastp]
NP_567929.1 [sequence] [blastp]
NP_849488.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001328575.1)
chlo 9  (predict for NP_567929.1)
chlo 9  (predict for NP_849488.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001328575.1)
chlo 9  (predict for NP_567929.1)
chlo 9  (predict for NP_849488.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
EX1
ath-r.7
for
EX1
ath-m.9
for
EX1
ath-e.2
for
EX1
ath-m.4.bio
for
EX1
ath-m.4.hor
for
EX1
ath-m.4.lig
for
EX1
ath-m.4.str
for
EX1
ath-m.4.tis
for
EX1
ath-u.5
for
EX2
bra-r.6
for
103834465
bra-r.6
for
103835390
bra-r.6
for
103862250
bna-r.1
for
125590163
bna-r.1
for
106367905
bna-r.1
for
106405956
ghi-r.1
for
107898780
ghi-r.1
for
107920344
ghi-r.1
for
107939298
cit-r.1
for
102628221
cit-r.1
for
102616290
gma-u.5
for
100817365
gma-u.5
for
100813487
gma-u.5
for
100787668
vvi-u.5
for
100262100
ppo-u.5
for
7483492
ppo-u.5
for
7457728
ppo-u.5
for
7472526
mtr-u.5
for
11410418
mtr-u.5
for
11432685
sly-u.5
for
101253794
sly-u.5
for
101268434
sot-r.1
for
102589029
nta-r.1
for
107806476
nta-r.1
for
107827941
nta-r.1
for
107822654
osa-u.5
for
4326159
osa-u.5
for
4348941
zma-u.5
for
103626161
zma-u.5
for
103640880
zma-u.5
for
103643442
tae-r.2
for
123181120
tae-r.2
for
123046406
tae-r.2
for
123068149
hvu-r.1
for
123431696
hvu-r.1
for
123442342
sbi-r.1
for
8079090
sbi-r.1
for
110437371
bdi-r.1
for
100830502
bdi-r.1
for
100822878
cre-r.1
for
CHLRE_03g163500v5


Ortholog ID: 2668
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi ppo ppo ppo mtr mtr sly sly sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol EX1 EX2 LOC103834465 LOC103835390 LOC103862250 LOC106405956 LOC106389593 LOC106361094 LOC107898780 LOC107949153 LOC107894168 LOC102628221 LOC102616290 LOC100813487 LOC100786321 LOC100783733 LOC100262100 LOC7483492 LOC7457728 LOC7472526 LOC11410418 LOC11432685 LOC101253794 LOC101268434 LOC102589029 LOC107806476 LOC107822654 LOC107820988 LOC4326159 LOC4348941 LOC103640880 LOC100304395 LOC100501252 LOC123181120 LOC123046406 LOC123121972 LOC123431696 LOC123442342 LOC8079090 LOC110437371 LOC100830502 LOC100822878 CHLRE_03g163500v5
Function* UvrB/UvrC domain protein (DUF3506) UvrB/UvrC domain protein (DUF3506) protein EXECUTER 1, chloroplastic protein EXECUTER 2, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 2, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 2, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 2, chloroplastic protein EXECUTER 2, chloroplastic protein EXECUTER 2, chloroplastic protein EXECUTER 2, chloroplastic protein EXECUTER 2, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 2, chloroplastic protein EXECUTER 2, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 2, chloroplastic protein EXECUTER 2, chloroplastic protein EXECUTER 1, chloroplastic-like protein EXECUTER 2, chloroplastic-like protein EXECUTER 1, chloroplastic-like protein EXECUTER 2, chloroplastic uncharacterized LOC100304395 Protein EXECUTER 2 chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 2, chloroplastic protein EXECUTER 2, chloroplastic protein EXECUTER 1, chloroplastic protein EXECUTER 2, chloroplastic protein EXECUTER 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 8
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00480 Glutathione metabolism 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00562 Inositol phosphate metabolism 2
ppo04070 Phosphatidylinositol signaling system 2
ppo04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
sly00270 Cysteine and methionine metabolism 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04146 Peroxisome 3
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00280 Valine, leucine and isoleucine degradation 2
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00280 Valine, leucine and isoleucine degradation 2
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 4
hvu00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829504 839642 103834465 103835390 103862250 106405956 106389593 106361094 107898780 107949153 107894168 102628221 102616290 100813487 100786321 100783733 100262100 7483492 7457728 7472526 11410418 11432685 101253794 101268434 102589029 107806476 107822654 107820988 4326159 4348941 103640880 100304395 100501252 123181120 123046406 123121972 123431696 123442342 8079090 110437371 100830502 100822878 5729069
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