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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   IYO   RPAP1-like, carboxy-terminal protein 
 ath-r.7   IYO   RPAP1-like, carboxy-terminal protein 
 ath-m.9   IYO   RPAP1-like, carboxy-terminal protein 
 ath-e.2   IYO   RPAP1-like, carboxy-terminal protein 
 ath-m.4.bio   IYO   RPAP1-like, carboxy-terminal protein 
 ath-m.4.hor   IYO   RPAP1-like, carboxy-terminal protein 
 ath-m.4.lig   IYO   RPAP1-like, carboxy-terminal protein 
 ath-m.4.str   IYO   RPAP1-like, carboxy-terminal protein 
 ath-m.4.tis   IYO   RPAP1-like, carboxy-terminal protein 
 bra-r.6   103863962   transcriptional elongation regulator MINIYO 
 bna-r.1   111212431   transcriptional elongation regulator MINIYO 
 bna-r.1   106446135   transcriptional elongation regulator MINIYO-like 
 ghi-r.1   107920037   transcriptional elongation regulator MINIYO 
 ghi-r.1   107922182   transcriptional elongation regulator MINIYO 
 cit-r.1   102629610   transcriptional elongation regulator MINIYO 
 gma-u.5   100819615   transcriptional elongation regulator MINIYO 
 gma-u.5   100796310   transcriptional elongation regulator MINIYO 
 vvi-u.5   100258889   transcriptional elongation regulator MINIYO 
 ppo-u.5   7472098   transcriptional elongation regulator MINIYO 
 mtr-u.5   11431603   transcriptional elongation regulator MINIYO 
 mtr-u.5   120580537   transcriptional elongation regulator MINIYO-like 
 mtr-u.5   120580536   transcriptional elongation regulator MINIYO 
 sly-u.5   101256927   transcriptional elongation regulator MINIYO 
 sot-r.1   102599570   transcriptional elongation regulator MINIYO 
 nta-r.1   107791649   transcriptional elongation regulator MINIYO 
 nta-r.1   107819869   transcriptional elongation regulator MINIYO 
 osa-u.5   4341363   transcriptional elongation regulator MINIYO 
 zma-u.5   103638625   transcriptional elongation regulator MINIYO 
 tae-r.2   123169905   transcriptional elongation regulator MINIYO 
 tae-r.2   123162795   transcriptional elongation regulator MINIYO 
 tae-r.2   123148060   transcriptional elongation regulator MINIYO 
 hvu-r.1   123413414   transcriptional elongation regulator MINIYO 
 sbi-r.1   8065033   transcriptional elongation regulator MINIYO 
 bdi-r.1   100830908   transcriptional elongation regulator MINIYO 

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Top 50 coexpressed genes to IYO (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to IYO (ath-u.5 coexpression data)

CoexMap"830001"


athIYO | Entrez gene ID : 830001      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 3 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030154 [list] [network] cell differentiation  (627 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_195557.2 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  nucl 2,  vacu 1  (predict for NP_195557.2)
Subcellular
localization
TargetP
chlo 8,  other 5  (predict for NP_195557.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
IYO
ath-r.7
for
IYO
ath-m.9
for
IYO
ath-e.2
for
IYO
ath-m.4.bio
for
IYO
ath-m.4.hor
for
IYO
ath-m.4.lig
for
IYO
ath-m.4.str
for
IYO
ath-m.4.tis
for
IYO
bra-r.6
for
103863962
bna-r.1
for
111212431
bna-r.1
for
106446135
ghi-r.1
for
107920037
ghi-r.1
for
107922182
cit-r.1
for
102629610
gma-u.5
for
100819615
gma-u.5
for
100796310
vvi-u.5
for
100258889
ppo-u.5
for
7472098
mtr-u.5
for
11431603
mtr-u.5
for
120580537
mtr-u.5
for
120580536
sly-u.5
for
101256927
sot-r.1
for
102599570
nta-r.1
for
107791649
nta-r.1
for
107819869
osa-u.5
for
4341363
zma-u.5
for
103638625
tae-r.2
for
123169905
tae-r.2
for
123162795
tae-r.2
for
123148060
hvu-r.1
for
123413414
sbi-r.1
for
8065033
bdi-r.1
for
100830908


Ortholog ID: 9631
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol IYO LOC103863962 LOC111212431 LOC106446135 LOC107920037 LOC107922182 LOC102629610 LOC100819615 LOC100796310 LOC100258889 LOC7472098 LOC11431603 LOC120580537 LOC120580536 LOC101256927 LOC102599570 LOC107791649 LOC107819869 LOC4341363 LOC103638625 LOC123169905 LOC123162795 LOC123148060 LOC123413414 LOC8065033 LOC100830908
Function* RPAP1-like, carboxy-terminal protein transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO-like transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO-like transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO transcriptional elongation regulator MINIYO
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 5
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 6
bra03040 Spliceosome 5
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 4
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 4
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit00071 Fatty acid degradation 2
cit00280 Valine, leucine and isoleucine degradation 2
cit01212 Fatty acid metabolism 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma04120 Ubiquitin mediated proteolysis 4
zma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
tae03082 ATP-dependent chromatin remodeling 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03015 mRNA surveillance pathway 3
tae03013 Nucleocytoplasmic transport 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03082 ATP-dependent chromatin remodeling 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 7
bdi03020 RNA polymerase 2
bdi03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830001 103863962 111212431 106446135 107920037 107922182 102629610 100819615 100796310 100258889 7472098 11431603 120580537 120580536 101256927 102599570 107791649 107819869 4341363 103638625 123169905 123162795 123148060 123413414 8065033 100830908
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