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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PDE149   integral membrane TerC family protein 
 ath-r.7   PDE149   integral membrane TerC family protein 
 ath-m.9   PDE149   integral membrane TerC family protein 
 ath-e.2   PDE149   integral membrane TerC family protein 
 ath-m.4.bio   PDE149   integral membrane TerC family protein 
 ath-m.4.hor   PDE149   integral membrane TerC family protein 
 ath-m.4.lig   PDE149   integral membrane TerC family protein 
 ath-m.4.str   PDE149   integral membrane TerC family protein 
 ath-m.4.tis   PDE149   integral membrane TerC family protein 
 bra-r.6   103846664   thylakoid membrane protein TERC, chloroplastic 
 bra-r.6   103850815   thylakoid membrane protein TERC, chloroplastic 
 bna-r.1   106383803   thylakoid membrane protein TERC, chloroplastic-like 
 bna-r.1   106372349   thylakoid membrane protein TERC, chloroplastic-like 
 bna-r.1   BNAC02G04260D   thylakoid membrane protein TERC, chloroplastic 
 ghi-r.1   107957968   thylakoid membrane protein TERC, chloroplastic 
 ghi-r.1   107905266   thylakoid membrane protein TERC, chloroplastic 
 cit-r.1   102611496   hypothetical protein 
 gma-u.5   100820402   thylakoid membrane protein TERC, chloroplastic 
 gma-u.5   100804852   thylakoid membrane protein TERC, chloroplastic 
 vvi-u.5   100265493   thylakoid membrane protein TERC, chloroplastic 
 ppo-u.5   7479513   thylakoid membrane protein TERC, chloroplastic 
 mtr-u.5   25484067   thylakoid membrane protein TERC, chloroplastic 
 sly-u.5   101251832   thylakoid membrane protein TERC, chloroplastic 
 sot-r.1   102591196   thylakoid membrane protein TERC, chloroplastic 
 nta-r.1   107768339   thylakoid membrane protein TERC, chloroplastic 
 nta-r.1   107801959   thylakoid membrane protein TERC, chloroplastic 
 osa-u.5   4337651   thylakoid membrane protein TERC, chloroplastic 
 zma-u.5   103635949   thylakoid membrane protein TERC, chloroplastic 
 zma-u.5   100284595   protein alx 
 hvu-r.1   123398869   thylakoid membrane protein TERC, chloroplastic 
 sbi-r.1   8071243   thylakoid membrane protein TERC, chloroplastic 
 bdi-r.1   100845282   thylakoid membrane protein TERC, chloroplastic 
 cre-r.1   CHLRE_17g712400v5   uncharacterized protein 

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Top 50 coexpressed genes to PDE149 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PDE149 (ath-u.5 coexpression data)

CoexMap"831086"


athPDE149 | Entrez gene ID : 831086      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma hvu sbi bdi cre tae
Paralog 9 2 3 2 1 2 1 1 1 1 1 2 1 2 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010027 [list] [network] thylakoid membrane organization  (49 genes)  IMP  
GO:0090351 [list] [network] seedling development  (137 genes)  IMP  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001331346.1 [sequence] [blastp]
NP_568257.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  chlo 2,  E.R. 2,  nucl_plas 2,  golg_plas 2,  cysk_plas 2,  cyto_plas 2  (predict for NP_001331346.1)
vacu 5,  plas 3,  extr 1,  nucl_plas 1,  cysk_plas 1,  E.R._plas 1,  mito_plas 1,  cyto_plas 1  (predict for NP_568257.1)
Subcellular
localization
TargetP
mito 6  (predict for NP_001331346.1)
chlo 7,  other 3  (predict for NP_568257.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PDE149
ath-r.7
for
PDE149
ath-m.9
for
PDE149
ath-e.2
for
PDE149
ath-m.4.bio
for
PDE149
ath-m.4.hor
for
PDE149
ath-m.4.lig
for
PDE149
ath-m.4.str
for
PDE149
ath-m.4.tis
for
PDE149
bra-r.6
for
103846664
bra-r.6
for
103850815
bna-r.1
for
106383803
bna-r.1
for
106372349
bna-r.1
for
BNAC02G04260D
ghi-r.1
for
107957968
ghi-r.1
for
107905266
cit-r.1
for
102611496
gma-u.5
for
100820402
gma-u.5
for
100804852
vvi-u.5
for
100265493
ppo-u.5
for
7479513
mtr-u.5
for
25484067
sly-u.5
for
101251832
sot-r.1
for
102591196
nta-r.1
for
107768339
nta-r.1
for
107801959
osa-u.5
for
4337651
zma-u.5
for
103635949
zma-u.5
for
100284595
hvu-r.1
for
123398869
sbi-r.1
for
8071243
bdi-r.1
for
100845282
cre-r.1
for
CHLRE_17g712400v5


Ortholog ID: 9651
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma zma hvu sbi bdi cre
Symbol PDE149 LOC103846664 LOC103850815 LOC106383803 BNAC02G04260D BNAC09G44550D LOC107957968 LOC107905266 LOC102611496 LOC100820402 LOC100804852 LOC100265493 LOC7479513 LOC25484067 LOC101251832 LOC102591196 LOC107768339 LOC107801959 LOC4337651 LOC103635949 LOC100284595 LOC123398869 LOC8071243 LOC100845282 CHLRE_17g712400v5
Function* integral membrane TerC family protein thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic-like thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic hypothetical protein thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic protein alx thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic thylakoid membrane protein TERC, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00010 Glycolysis / Gluconeogenesis 2
bna00030 Pentose phosphate pathway 2
bna00052 Galactose metabolism 2
bna00230 Purine metabolism 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00010 Glycolysis / Gluconeogenesis 2
bna00030 Pentose phosphate pathway 2
bna00052 Galactose metabolism 2
bna00230 Purine metabolism 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00010 Glycolysis / Gluconeogenesis 2
bna00030 Pentose phosphate pathway 2
bna00052 Galactose metabolism 2
bna00230 Purine metabolism 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 3
ppo04712 Circadian rhythm - plant 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
sot00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 5
nta03060 Protein export 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831086 103846664 103850815 106383803 106380807 106424585 107957968 107905266 102611496 100820402 100804852 100265493 7479513 25484067 101251832 102591196 107768339 107801959 4337651 103635949 100284595 123398869 8071243 100845282 66056966
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