Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SIG4   sigma factor 4 
 ath-r.7   SIG4   sigma factor 4 
 ath-m.9   SIG4   sigma factor 4 
 ath-e.2   SIG4   sigma factor 4 
 ath-m.4.bio   SIG4   sigma factor 4 
 ath-m.4.hor   SIG4   sigma factor 4 
 ath-m.4.lig   SIG4   sigma factor 4 
 ath-m.4.str   SIG4   sigma factor 4 
 ath-m.4.tis   SIG4   sigma factor 4 
 vvi-u.5   100244848   RNA polymerase sigma factor sigD, chloroplastic 
 ppo-u.5   18102037   RNA polymerase sigma factor sigD, chloroplastic 
 mtr-u.5   120579652   RNA polymerase sigma factor sigD, chloroplastic 
 mtr-u.5   11409298   RNA polymerase sigma factor sigD, chloroplastic 
 sly-u.5   101266372   RNA polymerase sigma factor sigD, chloroplastic 

close


Top 50 coexpressed genes to SIG4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to SIG4 (ath-u.5 coexpression data)

CoexMap"831218"


athSIG4 | Entrez gene ID : 831218      
Species ath vvi ppo mtr sly sot hvu tae cit sbi gma ghi zma cre bna nta bdi bra osa
Paralog 9 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006352 [list] [network] DNA-templated transcription initiation  (35 genes)  ISS TAS  
GO:0071482 [list] [network] cellular response to light stimulus  (105 genes)  IEP  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1621 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM ISS  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
Protein NP_196877.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  plas 1,  pero 1  (predict for NP_196877.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_196877.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SIG4

.
ath-r.7
for
SIG4

.
ath-m.9
for
SIG4

.
ath-e.2
for
SIG4

.
ath-m.4.bio
for
SIG4

.
ath-m.4.hor
for
SIG4

.
ath-m.4.lig
for
SIG4

.
ath-m.4.str
for
SIG4

.
ath-m.4.tis
for
SIG4

.
vvi-u.5
for
100244848

.
ppo-u.5
for
18102037

.
mtr-u.5
for
120579652

.
mtr-u.5
for
11409298

.
sly-u.5
for
101266372

.


Ortholog ID: 13192
Species ath sly bra bra vvi ppo mtr mtr bna bna sot cit nta nta
Symbol SIG4 LOC101266372 LOC103850892 LOC103846548 LOC100244848 LOC18102037 LOC120579652 LOC11409298 LOC125574912 LOC106417562 LOC102579944 LOC102630560 LOC107830369 LOC107792030
Function* sigma factor 4 RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic-like RNA polymerase sigma factor sigD, chloroplastic-like RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 4
mtr00710 Carbon fixation by Calvin cycle 3
mtr00500 Starch and sucrose metabolism 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00030 Pentose phosphate pathway 2
bna00480 Glutathione metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831218 101266372 103850892 103846548 100244848 18102037 120579652 11409298 125574912 106417562 102579944 102630560 107830369 107792030
The preparation time of this page was 0.2 [sec].