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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   IMD1   isopropylmalate dehydrogenase 1 
 ath-r.7   IMD1   isopropylmalate dehydrogenase 1 
 ath-e.2   IMD1   isopropylmalate dehydrogenase 1 
 ath-u.5   IMD3   isopropylmalate dehydrogenase 3 
 ath-u.5   IMD2   isopropylmalate dehydrogenase 2 
 gma-u.5   100793433   3-isopropylmalate dehydrogenase, chloroplastic-like 
 gma-u.5   100810468   3-isopropylmalate dehydrogenase 2, chloroplastic 
 gma-u.5   100807689   3-isopropylmalate dehydrogenase 2, chloroplastic 
 vvi-u.5   100259968   3-isopropylmalate dehydrogenase, chloroplastic 
 ppo-u.5   7470567   3-isopropylmalate dehydrogenase, chloroplastic 
 mtr-u.5   11433087   3-isopropylmalate dehydrogenase, chloroplastic 
 sly-u.5   101247914   3-isopropylmalate dehydrogenase, chloroplastic 
 osa-u.5   4333613   3-isopropylmalate dehydrogenase 2, chloroplastic 
 zma-u.5   100283376   3-isopropylmalate dehydrogenase 2 
 zma-u.5   100284589   uncharacterized LOC100284589 

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Top 50 coexpressed genes to IMD1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to IMD1 (ath-u.5 coexpression data)

CoexMap"831270"


athIMD1 | Entrez gene ID : 831270      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 5 3 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00290 [list] [network] Valine, leucine and isoleucine biosynthesis (21 genes)
ath00966 [list] [network] Glucosinolate biosynthesis (26 genes)
ath01210 [list] [network] 2-Oxocarboxylic acid metabolism (103 genes)
GO BP
GO:0009098 [list] [network] L-leucine biosynthetic process  (8 genes)  IDA IGI IMP  
GO:0019761 [list] [network] glucosinolate biosynthetic process  (43 genes)  IMP  
GO:0009553 [list] [network] embryo sac development  (161 genes)  IMP  
GO:0009753 [list] [network] response to jasmonic acid  (202 genes)  IEP  
GO:0009611 [list] [network] response to wounding  (271 genes)  IEP  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  ISS  
GO MF
GO:0003862 [list] [network] 3-isopropylmalate dehydrogenase activity  (4 genes)  IDA IGI IMP  
Protein NP_001031879.1 [sequence] [blastp]
NP_001031880.1 [sequence] [blastp]
NP_196924.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 3,  cyto_nucl 2,  E.R. 1,  pero 1  (predict for NP_001031879.1)
chlo 7,  cyto 2  (predict for NP_001031880.1)
chlo 7,  cyto 2  (predict for NP_196924.1)
Subcellular
localization
TargetP
other 3  (predict for NP_001031879.1)
other 3  (predict for NP_001031880.1)
other 3  (predict for NP_196924.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
IMD1

.
ath-r.7
for
IMD1

.
ath-e.2
for
IMD1

.
ath-u.5
for
IMD3

.
ath-u.5
for
IMD2

.
gma-u.5
for
100793433

.
gma-u.5
for
100810468

.
gma-u.5
for
100807689

.
vvi-u.5
for
100259968

.
ppo-u.5
for
7470567

.
mtr-u.5
for
11433087

.
sly-u.5
for
101247914

.
osa-u.5
for
4333613

.
zma-u.5
for
100283376

.
zma-u.5
for
100284589

.


Ortholog ID: 5830
Species ath ath gma gma sly osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol IMD1 IMD3 LOC100807689 LOC100793433 LOC101247914 LOC4333613 LOC100284589 LOC100283376 LOC103832473 LOC103850918 LOC100259968 LOC7470567 LOC11433087 LOC123047518 LOC123191140 LOC123428496 LOC107914151 LOC107897280 LOC111197702 LOC106430755 CHLRE_07g325400v5 LOC8055458 LOC102586564 LOC102627012 LOC100835182 LOC107784121 LOC107760060
Function* isopropylmalate dehydrogenase 1 isopropylmalate dehydrogenase 3 3-isopropylmalate dehydrogenase 2, chloroplastic 3-isopropylmalate dehydrogenase, chloroplastic-like 3-isopropylmalate dehydrogenase, chloroplastic 3-isopropylmalate dehydrogenase 2, chloroplastic uncharacterized LOC100284589 3-isopropylmalate dehydrogenase 2 3-isopropylmalate dehydrogenase, chloroplastic 3-isopropylmalate dehydrogenase 1, chloroplastic 3-isopropylmalate dehydrogenase, chloroplastic 3-isopropylmalate dehydrogenase, chloroplastic 3-isopropylmalate dehydrogenase, chloroplastic 3-isopropylmalate dehydrogenase 2, chloroplastic 3-isopropylmalate dehydrogenase 2, chloroplastic 3-isopropylmalate dehydrogenase 2, chloroplastic-like 3-isopropylmalate dehydrogenase 2, chloroplastic 3-isopropylmalate dehydrogenase 2, chloroplastic 3-isopropylmalate dehydrogenase, chloroplastic 3-isopropylmalate dehydrogenase, chloroplastic-like uncharacterized protein 3-isopropylmalate dehydrogenase 2, chloroplastic 3-isopropylmalate dehydrogenase, chloroplastic-like 3-isopropylmalate dehydrogenase 2, chloroplastic-like 3-isopropylmalate dehydrogenase 2, chloroplastic 3-isopropylmalate dehydrogenase 2, chloroplastic-like 3-isopropylmalate dehydrogenase 2, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00966 Glucosinolate biosynthesis 11
ath01210 2-Oxocarboxylic acid metabolism 11
ath00290 Valine, leucine and isoleucine biosynthesis 5
ath00270 Cysteine and methionine metabolism 5
ath01230 Biosynthesis of amino acids 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 16
ath01210 2-Oxocarboxylic acid metabolism 9
ath00290 Valine, leucine and isoleucine biosynthesis 7
ath00300 Lysine biosynthesis 5
ath00660 C5-Branched dibasic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 7
gma00290 Valine, leucine and isoleucine biosynthesis 4
gma01210 2-Oxocarboxylic acid metabolism 4
gma00660 C5-Branched dibasic acid metabolism 3
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 4
gma00290 Valine, leucine and isoleucine biosynthesis 3
gma00660 C5-Branched dibasic acid metabolism 3
gma01210 2-Oxocarboxylic acid metabolism 3
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 5
sly01210 2-Oxocarboxylic acid metabolism 2
sly00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 9
osa00300 Lysine biosynthesis 5
osa00261 Monobactam biosynthesis 2
osa00470 D-Amino acid metabolism 2
osa00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma03040 Spliceosome 2
zma04144 Endocytosis 2
zma00290 Valine, leucine and isoleucine biosynthesis 2
zma00660 C5-Branched dibasic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 4
zma04141 Protein processing in endoplasmic reticulum 3
zma03040 Spliceosome 2
zma04144 Endocytosis 2
zma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 4
bra00780 Biotin metabolism 3
bra00061 Fatty acid biosynthesis 3
bra01212 Fatty acid metabolism 3
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00966 Glucosinolate biosynthesis 11
bra01210 2-Oxocarboxylic acid metabolism 10
bra00290 Valine, leucine and isoleucine biosynthesis 3
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi01230 Biosynthesis of amino acids 3
vvi03018 RNA degradation 3
vvi00290 Valine, leucine and isoleucine biosynthesis 2
vvi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 3
ppo00290 Valine, leucine and isoleucine biosynthesis 2
ppo00660 C5-Branched dibasic acid metabolism 2
ppo01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 6
mtr01210 2-Oxocarboxylic acid metabolism 4
mtr04141 Protein processing in endoplasmic reticulum 2
mtr01200 Carbon metabolism 2
mtr00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 9
tae00300 Lysine biosynthesis 7
tae00470 D-Amino acid metabolism 3
tae03010 Ribosome 3
tae00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 12
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00290 Valine, leucine and isoleucine biosynthesis 2
ghi00660 C5-Branched dibasic acid metabolism 2
ghi01210 2-Oxocarboxylic acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 5
ghi01210 2-Oxocarboxylic acid metabolism 3
ghi00053 Ascorbate and aldarate metabolism 2
ghi00340 Histidine metabolism 2
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00290 Valine, leucine and isoleucine biosynthesis 5
bna00660 C5-Branched dibasic acid metabolism 5
bna01210 2-Oxocarboxylic acid metabolism 5
bna01230 Biosynthesis of amino acids 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00290 Valine, leucine and isoleucine biosynthesis 5
bna00660 C5-Branched dibasic acid metabolism 5
bna01210 2-Oxocarboxylic acid metabolism 5
bna01230 Biosynthesis of amino acids 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 9
cre01230 Biosynthesis of amino acids 7
cre01210 2-Oxocarboxylic acid metabolism 4
cre00300 Lysine biosynthesis 3
cre03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 5
sot01210 2-Oxocarboxylic acid metabolism 4
sot00061 Fatty acid biosynthesis 4
sot01212 Fatty acid metabolism 4
sot00300 Lysine biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00900 Terpenoid backbone biosynthesis 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit01200 Carbon metabolism 2
cit01230 Biosynthesis of amino acids 2
cit00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
bdi01230 Biosynthesis of amino acids 3
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00500 Starch and sucrose metabolism 2
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 8
nta01210 2-Oxocarboxylic acid metabolism 4
nta00220 Arginine biosynthesis 4
nta00260 Glycine, serine and threonine metabolism 2
nta00261 Monobactam biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 8
nta01210 2-Oxocarboxylic acid metabolism 4
nta00220 Arginine biosynthesis 4
nta01240 Biosynthesis of cofactors 4
nta00260 Glycine, serine and threonine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831270 840006 100807689 100793433 101247914 4333613 100284589 100283376 103832473 103850918 100259968 7470567 11433087 123047518 123191140 123428496 107914151 107897280 111197702 106430755 5726443 8055458 102586564 102627012 100835182 107784121 107760060
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