ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	HD2C	histone deacetylase 2C
ath-r.7	HD2C	histone deacetylase 2C
ath-m.9	HD2C	histone deacetylase 2C
ath-e.2	HD2C	histone deacetylase 2C
ath-m.4.bio	HD2C	histone deacetylase 2C
ath-m.4.hor	HD2C	histone deacetylase 2C
ath-m.4.lig	HD2C	histone deacetylase 2C
ath-m.4.str	HD2C	histone deacetylase 2C
ath-m.4.tis	HD2C	histone deacetylase 2C
ath-u.5	HD2B	histone deacetylase 2B
ath-u.5	HDA3	histone deacetylase 3
gma-u.5	HDT2	histone deacetylase HDT1-like
gma-u.5	HDT4	histone deacetylase HDT1-like
gma-u.5	100792094	uncharacterized LOC100792094
vvi-u.5	100256817	histone deacetylase HDT1
vvi-u.5	100252840	histone deacetylase HDT1
ppo-u.5	18097993	histone deacetylase HDT1
ppo-u.5	7474933	histone deacetylase HDT1
ppo-u.5	18100075	histone deacetylase HDT1
mtr-u.5	112416804	histone deacetylase HDT1
mtr-u.5	25487509	histone deacetylase HDT1
mtr-u.5	11434564	histone deacetylase HDT1
sly-u.5	101244607	histone deacetylase HDT1
sly-u.5	101262270	histone deacetylase HDT1
osa-u.5	4339823	histone deacetylase HDT2
zma-u.5	542355	histone deacetylase103
zma-u.5	542636	histone deacetylase102
zma-u.5	103636709	histone deacetylase HDT1-like

Top 50 coexpressed genes to HD2C (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to HD2C (ath-u.5 coexpression data)

CoexMap"831733"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0045892 [list] [network] negative regulation of DNA-templated transcription	(200 genes)	IDA
GO:0009414 [list] [network] response to water deprivation	(426 genes)	IMP
GO:0009409 [list] [network] response to cold	(436 genes)	IEP
GO:0009651 [list] [network] response to salt stress	(473 genes)	IMP
GO:0009737 [list] [network] response to abscisic acid	(550 genes)	IEP

GO CC

GO:0005730 [list] [network] nucleolus	(394 genes)	HDA IDA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

GO:0004407 [list] [network] histone deacetylase activity	(17 genes)	ISS
GO:0000976 [list] [network] transcription cis-regulatory region binding	(716 genes)	IPI
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_195994.3 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for NP_195994.3)

Subcellular
localization
TargetP

other 8

(predict for NP_195994.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for HD2C	ath-r.7 for HD2C	ath-m.9 for HD2C	ath-e.2 for HD2C	ath-m.4.bio for HD2C	ath-m.4.hor for HD2C	ath-m.4.lig for HD2C	ath-m.4.str for HD2C	ath-m.4.tis for HD2C	ath-u.5 for HD2B	ath-u.5 for HDA3	gma-u.5 for HDT2	gma-u.5 for HDT4	gma-u.5 for 100792094	vvi-u.5 for 100256817	vvi-u.5 for 100252840	ppo-u.5 for 18097993	ppo-u.5 for 7474933	ppo-u.5 for 18100075	mtr-u.5 for 112416804	mtr-u.5 for 25487509	mtr-u.5 for 11434564	sly-u.5 for 101244607	sly-u.5 for 101262270	osa-u.5 for 4339823	zma-u.5 for 542355	zma-u.5 for 542636	zma-u.5 for 103636709

Ortholog

Ortholog ID: 1463

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

HDA3

HD2B

HD2A

Function^*

histone deacetylase 3

histone deacetylase 2B

histone deacetylase HDT2

histone deacetylase HDT3

histone deacetylase HDT1

histone deacetylase HDT3

histone deacetylase HDT1

histone deacetylase HDT1-like

uncharacterized LOC100792094

histone deacetylase HDT1

histone deacetylase HDT1-like

histone deacetylase HDT2

histone deacetylase103

histone deacetylase HDT3-like

histone deacetylase HDT2

histone deacetylase HDT2-like

histone deacetylase HDT2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6
ath03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	8
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	6
bra03040	Spliceosome	2
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2
bna00540	Lipopolysaccharide biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	4
ghi03420	Nucleotide excision repair	4
ghi03040	Spliceosome	2
ghi04075	Plant hormone signal transduction	2
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	4
gma03008	Ribosome biogenesis in eukaryotes	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03020	RNA polymerase	3
ppo03420	Nucleotide excision repair	3
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	7
mtr03018	RNA degradation	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	5
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	8
sly03010	Ribosome	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	6
osa03010	Ribosome	5
osa00270	Cysteine and methionine metabolism	2
osa00450	Selenocompound metabolism	2
osa01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	8
tae03010	Ribosome	7
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4
sbi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2
sbi03015	mRNA surveillance pathway	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03030	DNA replication	2

Expression

Expression pattern

Entrez Gene ID^*

823605

832328

103856522

103845525

106372652

107955725

107905356

102615049

102618548

100792094

547649

100256817

100252840

18097993

18100075

112416804

11434564

101262270

101244607

102595604

102595265

107782996

107798125

4339823

542355

103636373

123183440

780626

123452961

8066575

8068982

100835633

100837781

The preparation time of this page was 0.3 [sec].


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	11	3	2	3	3	2	1	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to HD2C (ath-u.5 coexpression data)

Top 50 enrichment test to HD2C (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**