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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CRR42   DUF3148 family protein 
 ath-r.7   CRR42   DUF3148 family protein 
 ath-m.9   CRR42   DUF3148 family protein 
 ath-e.2   CRR42   DUF3148 family protein 
 ath-m.4.bio   CRR42   DUF3148 family protein 
 ath-m.4.hor   CRR42   DUF3148 family protein 
 ath-m.4.lig   CRR42   DUF3148 family protein 
 ath-m.4.str   CRR42   DUF3148 family protein 
 ath-m.4.tis   CRR42   DUF3148 family protein 
 bra-r.6   103856473   uncharacterized LOC103856473 
 bra-r.6   103851391   uncharacterized LOC103851391 
 bna-r.1   106386984   protein CHLORORESPIRATORY REDUCTION 42, chloroplastic 
 bna-r.1   106425726   protein CHLORORESPIRATORY REDUCTION 42, chloroplastic-like 
 bna-r.1   BNAA03G08160D   protein CHLORORESPIRATORY REDUCTION 42, chloroplastic 
 cit-r.1   102617996   hypothetical protein 
 gma-u.5   100305889   uncharacterized LOC100305889 
 gma-u.5   100778186   uncharacterized LOC100778186 
 vvi-u.5   100265104   protein CHLORORESPIRATORY REDUCTION 42, chloroplastic 
 ppo-u.5   7460107   protein CHLORORESPIRATORY REDUCTION 42, chloroplastic 
 mtr-u.5   11442196   uncharacterized LOC11442196 
 sly-u.5   101249750   protein CHLORORESPIRATORY REDUCTION 42, chloroplastic 
 sot-r.1   102592680   uncharacterized LOC102592680 
 osa-u.5   4342473   protein CHLORORESPIRATORY REDUCTION 42, chloroplastic 
 zma-u.5   100277223   DUF3148 family protein 
 tae-r.2   123165980   uncharacterized LOC123165980 
 tae-r.2   123159433   uncharacterized LOC123159433 
 tae-r.2   123153377   uncharacterized LOC123153377 
 hvu-r.1   123410095   uncharacterized LOC123410095 
 sbi-r.1   8083704   uncharacterized LOC8083704 
 bdi-r.1   100829764   uncharacterized LOC100829764 

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Top 50 coexpressed genes to CRR42 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CRR42 (ath-u.5 coexpression data)

CoexMap"832218"


athCRR42 | Entrez gene ID : 832218      
Species ath bra bna cit gma vvi ppo mtr sly sot osa zma tae hvu sbi bdi nta cre ghi
Paralog 9 2 3 1 2 1 1 1 1 1 1 1 3 1 1 1 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010258 [list] [network] NADH dehydrogenase complex (plastoquinone) assembly  (8 genes)  IEA IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001331861.1 [sequence] [blastp]
NP_568406.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1  (predict for NP_001331861.1)
chlo 6,  mito 3,  vacu 1,  cyto_mito 1,  mito_plas 1  (predict for NP_568406.2)
Subcellular
localization
TargetP
mito 4,  chlo 4  (predict for NP_001331861.1)
mito 4  (predict for NP_568406.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CRR42
ath-r.7
for
CRR42
ath-m.9
for
CRR42
ath-e.2
for
CRR42
ath-m.4.bio
for
CRR42
ath-m.4.hor
for
CRR42
ath-m.4.lig
for
CRR42
ath-m.4.str
for
CRR42
ath-m.4.tis
for
CRR42
bra-r.6
for
103856473
bra-r.6
for
103851391
bna-r.1
for
106386984
bna-r.1
for
106425726
bna-r.1
for
BNAA03G08160D
cit-r.1
for
102617996
gma-u.5
for
100305889
gma-u.5
for
100778186
vvi-u.5
for
100265104
ppo-u.5
for
7460107
mtr-u.5
for
11442196
sly-u.5
for
101249750
sot-r.1
for
102592680
osa-u.5
for
4342473
zma-u.5
for
100277223
tae-r.2
for
123165980
tae-r.2
for
123159433
tae-r.2
for
123153377
hvu-r.1
for
123410095
sbi-r.1
for
8083704
bdi-r.1
for
100829764


Ortholog ID: 11419
Species ath bra bra bna bna bna cit gma gma vvi ppo mtr sly sot osa zma tae tae tae hvu sbi bdi
Symbol CRR42 LOC103856473 LOC103851391 LOC106386984 LOC106425726 BNAA03G08160D LOC102617996 LOC100305889 LOC100778186 LOC100265104 LOC7460107 LOC11442196 LOC101249750 LOC102592680 LOC4342473 LOC100277223 LOC123165980 LOC123159433 LOC123153377 LOC123410095 LOC8083704 LOC100829764
Function* DUF3148 family protein uncharacterized LOC103856473 uncharacterized LOC103851391 protein CHLORORESPIRATORY REDUCTION 42, chloroplastic protein CHLORORESPIRATORY REDUCTION 42, chloroplastic-like protein CHLORORESPIRATORY REDUCTION 42, chloroplastic hypothetical protein uncharacterized LOC100305889 uncharacterized LOC100778186 protein CHLORORESPIRATORY REDUCTION 42, chloroplastic protein CHLORORESPIRATORY REDUCTION 42, chloroplastic uncharacterized LOC11442196 protein CHLORORESPIRATORY REDUCTION 42, chloroplastic uncharacterized LOC102592680 protein CHLORORESPIRATORY REDUCTION 42, chloroplastic DUF3148 family protein uncharacterized LOC123165980 uncharacterized LOC123159433 uncharacterized LOC123153377 uncharacterized LOC123410095 uncharacterized LOC8083704 uncharacterized LOC100829764
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 7
bra00630 Glyoxylate and dicarboxylate metabolism 5
bra00710 Carbon fixation by Calvin cycle 3
bra00260 Glycine, serine and threonine metabolism 2
bra00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00020 Citrate cycle (TCA cycle) 2
bra00270 Cysteine and methionine metabolism 2
bra00566 Sulfoquinovose metabolism 2
bra00620 Pyruvate metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00330 Arginine and proline metabolism 2
bna00360 Phenylalanine metabolism 2
bna00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00330 Arginine and proline metabolism 2
bna00360 Phenylalanine metabolism 2
bna00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00330 Arginine and proline metabolism 2
bna00360 Phenylalanine metabolism 2
bna00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 7
cit00630 Glyoxylate and dicarboxylate metabolism 5
cit00620 Pyruvate metabolism 3
cit00260 Glycine, serine and threonine metabolism 3
cit04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 3
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 6
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 9
mtr00860 Porphyrin metabolism 3
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 5
sot00630 Glyoxylate and dicarboxylate metabolism 4
sot00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 6
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00906 Carotenoid biosynthesis 2
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 7
bdi00350 Tyrosine metabolism 2
bdi00360 Phenylalanine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832218 103856473 103851391 106386984 106425726 106435017 102617996 100305889 100778186 100265104 7460107 11442196 101249750 102592680 4342473 100277223 123165980 123159433 123153377 123410095 8083704 100829764
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