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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G24060   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-r.7   AT5G24060   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-e.2   AT5G24060   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-u.5   AT3G49140   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103873085   uncharacterized protein At3g49140 
 bna-r.1   106347436   uncharacterized protein At3g49140-like 
 bna-r.1   106348288   uncharacterized protein At3g49140 
 bna-r.1   106436476   uncharacterized protein At3g49140 
 ghi-r.1   107890161   uncharacterized protein At3g49140 
 ghi-r.1   107917885   uncharacterized protein At3g49140 
 ghi-r.1   107914729   uncharacterized protein At3g49140 
 cit-r.1   102624943   uncharacterized protein At3g49140-like 
 gma-u.5   100797899   uncharacterized protein At3g49140 
 gma-u.5   100789270   uncharacterized protein At3g49140 
 vvi-u.5   100252576   uncharacterized protein At3g49140 
 ppo-u.5   18097544   uncharacterized protein At3g49140 
 ppo-u.5   7496588   uncharacterized protein At3g49140 
 mtr-u.5   11440642   uncharacterized protein At3g49140 
 sly-u.5   101258960   uncharacterized protein At3g49140 
 sly-u.5   101257144   uncharacterized protein At3g49140-like 
 sot-r.1   102580234   uncharacterized protein At3g49140-like 
 sot-r.1   102601899   uncharacterized protein At3g49140-like 
 nta-r.1   107765057   uncharacterized protein At3g49140 
 nta-r.1   107818465   uncharacterized protein At3g49140-like 
 nta-r.1   107817994   uncharacterized protein At3g49140 
 osa-u.5   4350679   uncharacterized protein At3g49140 
 zma-u.5   100304356   Pentatricopeptide repeat (PPR) superfamily protein 
 tae-r.2   123110295   uncharacterized protein At3g49140 
 tae-r.2   123102154   uncharacterized protein At3g49140 
 tae-r.2   123119331   uncharacterized protein At3g49140 
 hvu-r.1   123397985   uncharacterized protein At3g49140-like 
 sbi-r.1   110435396   uncharacterized protein At3g49140-like 
 bdi-r.1   100835872   uncharacterized protein At3g49140 

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Top 50 coexpressed genes to AT5G24060 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G24060 (ath-u.5 coexpression data)

CoexMap"832471"


athAT5G24060 | Entrez gene ID : 832471      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 3 3 1 2 1 2 1 2 2 3 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190376.1 [sequence] [blastp]
NP_001331453.1 [sequence] [blastp]
NP_197794.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 2,  chlo_mito 2,  nucl 1,  E.R. 1,  cyto_pero 1  (predict for NP_001190376.1)
cyto 5,  nucl 2,  pero 1,  chlo 1,  cysk_plas 1  (predict for NP_001331453.1)
chlo 5,  cyto 2,  nucl 1,  cyto_pero 1,  cyto_E.R. 1  (predict for NP_197794.2)
Subcellular
localization
TargetP
chlo 4,  other 3  (predict for NP_001190376.1)
other 8  (predict for NP_001331453.1)
chlo 3,  other 3  (predict for NP_197794.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G24060
ath-r.7
for
AT5G24060
ath-e.2
for
AT5G24060
ath-u.5
for
AT3G49140
bra-r.6
for
103873085
bna-r.1
for
106347436
bna-r.1
for
106348288
bna-r.1
for
106436476
ghi-r.1
for
107890161
ghi-r.1
for
107917885
ghi-r.1
for
107914729
cit-r.1
for
102624943
gma-u.5
for
100797899
gma-u.5
for
100789270
vvi-u.5
for
100252576
ppo-u.5
for
18097544
ppo-u.5
for
7496588
mtr-u.5
for
11440642
sly-u.5
for
101258960
sly-u.5
for
101257144
sot-r.1
for
102580234
sot-r.1
for
102601899
nta-r.1
for
107765057
nta-r.1
for
107818465
nta-r.1
for
107817994
osa-u.5
for
4350679
zma-u.5
for
100304356
tae-r.2
for
123110295
tae-r.2
for
123102154
tae-r.2
for
123119331
hvu-r.1
for
123397985
sbi-r.1
for
110435396
bdi-r.1
for
100835872


Ortholog ID: 5949
Species ath ath bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol AT5G24060 AT3G49140 LOC103873085 LOC106348288 LOC106436476 LOC106400679 LOC107917885 LOC107914729 LOC107913551 LOC102624943 LOC100797899 LOC100789270 LOC100252576 LOC18097544 LOC7496588 LOC11440642 LOC101258960 LOC101257144 LOC102580234 LOC102601899 LOC107765057 LOC107817994 LOC107774684 LOC4350679 LOC100304356 LOC123110295 LOC123102154 LOC123119331 LOC123397985 LOC110435396 LOC100835872
Function* Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein uncharacterized protein At3g49140 uncharacterized protein At3g49140 uncharacterized protein At3g49140 uncharacterized protein At3g49140-like uncharacterized protein At3g49140 uncharacterized protein At3g49140 uncharacterized protein At3g49140 uncharacterized protein At3g49140-like uncharacterized protein At3g49140 uncharacterized protein At3g49140 uncharacterized protein At3g49140 uncharacterized protein At3g49140 uncharacterized protein At3g49140 uncharacterized protein At3g49140 uncharacterized protein At3g49140 uncharacterized protein At3g49140-like uncharacterized protein At3g49140-like uncharacterized protein At3g49140-like uncharacterized protein At3g49140 uncharacterized protein At3g49140 uncharacterized protein At3g49140 uncharacterized protein At3g49140 Pentatricopeptide repeat (PPR) superfamily protein uncharacterized protein At3g49140 uncharacterized protein At3g49140 uncharacterized protein At3g49140 uncharacterized protein At3g49140-like uncharacterized protein At3g49140-like uncharacterized protein At3g49140
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00920 Sulfur metabolism 2
bna00190 Oxidative phosphorylation 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00920 Sulfur metabolism 2
bna00190 Oxidative phosphorylation 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 2
bna00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00561 Glycerolipid metabolism 3
vvi00750 Vitamin B6 metabolism 2
vvi01240 Biosynthesis of cofactors 2
vvi00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00561 Glycerolipid metabolism 3
sot00566 Sulfoquinovose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 4
nta00566 Sulfoquinovose metabolism 4
nta00541 Biosynthesis of various nucleotide sugars 2
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
bdi00350 Tyrosine metabolism 2
bdi00360 Phenylalanine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832471 824075 103873085 106348288 106436476 106400679 107917885 107914729 107913551 102624943 100797899 100789270 100252576 18097544 7496588 11440642 101258960 101257144 102580234 102601899 107765057 107817994 107774684 4350679 100304356 123110295 123102154 123119331 123397985 110435396 100835872
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