ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	XGD1	xylogalacturonan deficient 1
ath-r.7	XGD1	xylogalacturonan deficient 1
ath-m.9	XGD1	xylogalacturonan deficient 1
ath-e.2	XGD1	xylogalacturonan deficient 1
ath-m.4.bio	XGD1	xylogalacturonan deficient 1
ath-m.4.hor	XGD1	xylogalacturonan deficient 1
ath-m.4.lig	XGD1	xylogalacturonan deficient 1
ath-m.4.str	XGD1	xylogalacturonan deficient 1
ath-m.4.tis	XGD1	xylogalacturonan deficient 1
ath-u.5	AT3G42180	Exostosin family protein
bna-r.1	111197960	probable glycosyltransferase At5g20260
gma-u.5	100816304	xylogalacturonan beta-1,3-xylosyltransferase
gma-u.5	100803668	probable glycosyltransferase At3g42180
mtr-u.5	11440675	probable glycosyltransferase At3g42180
sot-r.1	102593038	probable glycosyltransferase At3g42180
osa-u.5	4341856	probable glycosyltransferase At5g20260

Annotation

functional annotation

KEGG

GO BP

GO:0010398 [list] [network] xylogalacturonan metabolic process	(1 genes)	IMP
GO:0045489 [list] [network] pectin biosynthetic process	(39 genes)	IMP
GO:0009101 [list] [network] glycoprotein biosynthetic process	(92 genes)	IEA

GO CC

GO:0005802 [list] [network] trans-Golgi network	(279 genes)	HDA
GO:0005768 [list] [network] endosome	(359 genes)	HDA
GO:0005794 [list] [network] Golgi apparatus	(1198 genes)	HDA IDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	ISM

GO MF

GO:0102983 [list] [network] xylogalacturonan beta-1,3-xylosyltransferase activity	(1 genes)	IEA
GO:0035252 [list] [network] UDP-xylosyltransferase activity	(9 genes)	IDA

Protein

NP_198314.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, mito 2, vacu 2, nucl 1, extr 1

(predict for NP_198314.2)

Subcellular
localization
TargetP

scret 1

(predict for NP_198314.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for XGD1	ath-r.7 for XGD1	ath-m.9 for XGD1	ath-e.2 for XGD1	ath-m.4.bio for XGD1	ath-m.4.hor for XGD1	ath-m.4.lig for XGD1	ath-m.4.str for XGD1	ath-m.4.tis for XGD1	ath-u.5 for AT3G42180	bna-r.1 for 111197960	gma-u.5 for 100816304	gma-u.5 for 100803668	mtr-u.5 for 11440675	sot-r.1 for 102593038	osa-u.5 for 4341856

Ortholog

Ortholog ID: 1666

Species

ath

bna

ghi

gma

mtr

sot

osa

Symbol

XGD1

Function^*

xylogalacturonan deficient 1

probable glycosyltransferase At5g20260

probable glycosyltransferase At5g03795

probable glycosyltransferase At5g20260

xylogalacturonan beta-1,3-xylosyltransferase

probable glycosyltransferase At3g42180

probable glycosyltransferase At5g20260

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	4
ath00220	Arginine biosynthesis	2
ath00250	Alanine, aspartate and glutamate metabolism	2
ath00630	Glyoxylate and dicarboxylate metabolism	2
ath00910	Nitrogen metabolism	2