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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CUL4   cullin4 
 ath-r.7   CUL4   cullin4 
 ath-m.9   CUL4   cullin4 
 ath-e.2   CUL4   cullin4 
 ath-m.4.bio   CUL4   cullin4 
 ath-m.4.hor   CUL4   cullin4 
 ath-m.4.lig   CUL4   cullin4 
 ath-m.4.str   CUL4   cullin4 
 ath-m.4.tis   CUL4   cullin4 
 bra-r.6   103827747   cullin-4 
 bra-r.6   103839622   cullin-4 
 bra-r.6   103853691   cullin-4 
 bna-r.1   106411069   cullin-4 
 bna-r.1   125575610   cullin-4-like 
 bna-r.1   106410586   cullin-4 
 ghi-r.1   107901884   cullin-4 
 ghi-r.1   107913786   cullin-4 
 ghi-r.1   107944078   cullin-4 
 cit-r.1   102612108   cullin-4 
 gma-u.5   100797895   cullin-4 
 gma-u.5   100779748   cullin-4 
 gma-u.5   100805491   cullin-4 
 vvi-u.5   100233055   cullin-4 
 ppo-u.5   7463008   cullin-4 
 ppo-u.5   18103242   cullin-4 
 mtr-u.5   11437813   cullin-4 
 sly-u.5   101248739   cullin-4 
 sly-u.5   CUL4   cullin 4 
 sot-r.1   102605478   cullin-4-like 
 sot-r.1   102585506   cullin-4-like 
 nta-r.1   107825351   cullin-4 
 nta-r.1   107770797   cullin-4 
 osa-u.5   4334354   cullin-4 
 zma-u.5   100501431   uncharacterized LOC100501431 
 zma-u.5   103625822   cullin-4 
 tae-r.2   123105325   cullin-4 
 tae-r.2   123113586   cullin-4 
 tae-r.2   123123113   cullin-4 
 hvu-r.1   123452590   cullin-4 
 sbi-r.1   8084141   cullin-4 
 bdi-r.1   100834237   cullin-4 
 cre-r.1   CHLRE_12g516500v5   uncharacterized protein 

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Top 50 coexpressed genes to CUL4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CUL4 (ath-u.5 coexpression data)

CoexMap"834663"


athCUL4 | Entrez gene ID : 834663      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 3 3 1 3 1 2 1 2 2 2 1 2 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03420 [list] [network] Nucleotide excision repair (85 genes)
ath04120 [list] [network] Ubiquitin mediated proteolysis (162 genes)
GO BP
GO:0048575 [list] [network] short-day photoperiodism, flowering  (4 genes)  IMP  
GO:0000209 [list] [network] protein polyubiquitination  (9 genes)  IDA  
GO:0010100 [list] [network] negative regulation of photomorphogenesis  (16 genes)  IMP  
GO:0010182 [list] [network] sugar mediated signaling pathway  (40 genes)  IMP  
GO:0048825 [list] [network] cotyledon development  (61 genes)  IMP  
GO:0009640 [list] [network] photomorphogenesis  (77 genes)  IMP  
GO:0006281 [list] [network] DNA repair  (203 genes)  IMP  
GO:0048366 [list] [network] leaf development  (371 genes)  IMP  
GO:0009908 [list] [network] flower development  (378 genes)  IMP  
GO:0009755 [list] [network] hormone-mediated signaling pathway  (447 genes)  IMP  
GO:0048367 [list] [network] shoot system development  (800 genes)  IMP  
GO:0010154 [list] [network] fruit development  (807 genes)  IMP  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  IPI  
GO:0000151 [list] [network] ubiquitin ligase complex  (192 genes)  IPI  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IC  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_568658.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  chlo 2  (predict for NP_568658.1)
Subcellular
localization
TargetP
chlo 6  (predict for NP_568658.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CUL4
ath-r.7
for
CUL4
ath-m.9
for
CUL4
ath-e.2
for
CUL4
ath-m.4.bio
for
CUL4
ath-m.4.hor
for
CUL4
ath-m.4.lig
for
CUL4
ath-m.4.str
for
CUL4
ath-m.4.tis
for
CUL4
bra-r.6
for
103827747
bra-r.6
for
103839622
bra-r.6
for
103853691
bna-r.1
for
106411069
bna-r.1
for
125575610
bna-r.1
for
106410586
ghi-r.1
for
107901884
ghi-r.1
for
107913786
ghi-r.1
for
107944078
cit-r.1
for
102612108
gma-u.5
for
100797895
gma-u.5
for
100779748
gma-u.5
for
100805491
vvi-u.5
for
100233055
ppo-u.5
for
7463008
ppo-u.5
for
18103242
mtr-u.5
for
11437813
sly-u.5
for
101248739
sly-u.5
for
CUL4
sot-r.1
for
102605478
sot-r.1
for
102585506
nta-r.1
for
107825351
nta-r.1
for
107770797
osa-u.5
for
4334354
zma-u.5
for
100501431
zma-u.5
for
103625822
tae-r.2
for
123105325
tae-r.2
for
123113586
tae-r.2
for
123123113
hvu-r.1
for
123452590
sbi-r.1
for
8084141
bdi-r.1
for
100834237
cre-r.1
for
CHLRE_12g516500v5


Ortholog ID: 4984
Species ath bra bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi ppo ppo mtr sly sly sot sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol CUL4 LOC103827747 LOC103839622 LOC103853691 LOC106411069 LOC106410586 LOC106401844 LOC107913786 LOC107944078 LOC121230862 LOC102612108 LOC100797895 LOC100779748 LOC100805491 LOC100233055 LOC7463008 LOC18103242 LOC11437813 LOC101248739 CUL4 LOC102605478 LOC102585506 LOC107825351 LOC107770797 LOC4334354 LOC100501431 LOC103625822 LOC123105325 LOC123113586 LOC123123113 LOC123452590 LOC8084141 LOC100834237 CHLRE_12g516500v5
Function* cullin4 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4-like cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 cullin 4 cullin-4-like cullin-4-like cullin-4 cullin-4 cullin-4 uncharacterized LOC100501431 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03420 Nucleotide excision repair 3
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 4
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
bra03420 Nucleotide excision repair 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 4
bra04141 Protein processing in endoplasmic reticulum 3
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 8
bna03420 Nucleotide excision repair 7
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 9
bna03420 Nucleotide excision repair 6
bna04141 Protein processing in endoplasmic reticulum 3
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 9
bna03420 Nucleotide excision repair 7
bna04141 Protein processing in endoplasmic reticulum 3
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 6
ghi04120 Ubiquitin mediated proteolysis 6
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 6
ghi04120 Ubiquitin mediated proteolysis 6
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 6
ghi04120 Ubiquitin mediated proteolysis 6
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma00500 Starch and sucrose metabolism 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 6
gma04145 Phagosome 6
gma04142 Lysosome 3
gma00480 Glutathione metabolism 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 2
gma04142 Lysosome 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 5
ppo03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 7
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03420 Nucleotide excision repair 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03420 Nucleotide excision repair 2
sly03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 3
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03420 Nucleotide excision repair 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03420 Nucleotide excision repair 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta03040 Spliceosome 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03420 Nucleotide excision repair 2
osa03082 ATP-dependent chromatin remodeling 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 10
zma04141 Protein processing in endoplasmic reticulum 3
zma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 6
zma03018 RNA degradation 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 6
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 4
tae04120 Ubiquitin mediated proteolysis 3
tae03250 Viral life cycle - HIV-1 3
tae03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 5
sbi03018 RNA degradation 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04382 Cornified envelope formation 2
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04120 Ubiquitin mediated proteolysis 2
cre00190 Oxidative phosphorylation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834663 103827747 103839622 103853691 106411069 106410586 106401844 107913786 107944078 121230862 102612108 100797895 100779748 100805491 100233055 7463008 18103242 11437813 101248739 544135 102605478 102585506 107825351 107770797 4334354 100501431 103625822 123105325 123113586 123123113 123452590 8084141 100834237 5728777
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