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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   XRI1   x-ray induced transcript 1 
 ath-r.7   XRI1   x-ray induced transcript 1 
 ath-m.9   XRI1   x-ray induced transcript 1 
 ath-e.2   XRI1   x-ray induced transcript 1 
 ath-m.4.bio   XRI1   x-ray induced transcript 1 
 ath-m.4.hor   XRI1   x-ray induced transcript 1 
 ath-m.4.lig   XRI1   x-ray induced transcript 1 
 ath-m.4.str   XRI1   x-ray induced transcript 1 
 ath-m.4.tis   XRI1   x-ray induced transcript 1 
 bra-r.6   103874983   protein XRI1 
 bra-r.6   103837262   protein XRI1 
 bna-r.1   106428112   protein XRI1 
 bna-r.1   106348905   protein XRI1-like 
 ghi-r.1   107925720   protein XRI1 
 ghi-r.1   107962811   protein XRI1 
 ghi-r.1   107955247   protein XRI1 
 cit-r.1   102612966   protein XRI1-like 
 cit-r.1   102625652   protein XRI1 
 gma-u.5   100819560   protein XRI1 
 gma-u.5   100813418   protein XRI1 
 gma-u.5   100791247   protein XRI1-like 
 ppo-u.5   7471150   protein XRI1 
 mtr-u.5   25500347   protein XRI1 
 mtr-u.5   25498304   protein XRI1 
 sly-u.5   101252119   protein XRI1 
 sly-u.5   101248986   protein XRI1 
 sot-r.1   102585955   protein XRI1-like 
 sot-r.1   102593737   protein XRI1 
 nta-r.1   107759756   protein XRI1-like 
 nta-r.1   107774590   protein XRI1 
 nta-r.1   107795269   protein XRI1-like 
 osa-u.5   4324358   protein XRI1 
 zma-u.5   100280154   uncharacterized LOC100280154 
 tae-r.2   123071973   protein XRI1 
 tae-r.2   123080278   protein XRI1 
 tae-r.2   123063077   protein XRI1 
 hvu-r.1   123445212   protein XRI1-like 
 sbi-r.1   8059359   protein XRI1 
 bdi-r.1   100843140   protein XRI1 

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Top 50 coexpressed genes to XRI1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to XRI1 (ath-u.5 coexpression data)

CoexMap"834930"


athXRI1 | Entrez gene ID : 834930      
Species ath bra bna ghi cit gma ppo mtr sly sot nta osa zma tae hvu sbi bdi cre vvi
Paralog 9 2 2 3 2 3 1 2 2 2 3 1 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010165 [list] [network] response to X-ray  (4 genes)  IEP  
GO:0007143 [list] [network] female meiotic nuclear division  (7 genes)  IMP  
GO:0007140 [list] [network] male meiotic nuclear division  (27 genes)  IMP  
GO:0006281 [list] [network] DNA repair  (203 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001154770.1 [sequence] [blastp]
NP_001330159.1 [sequence] [blastp]
NP_001330160.1 [sequence] [blastp]
NP_199683.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001154770.1)
nucl 9,  cyto_nucl 5  (predict for NP_001330159.1)
nucl 10  (predict for NP_001330160.1)
nucl 9,  cyto_nucl 5  (predict for NP_199683.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001154770.1)
other 8  (predict for NP_001330159.1)
other 9  (predict for NP_001330160.1)
other 8  (predict for NP_199683.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
XRI1
ath-r.7
for
XRI1
ath-m.9
for
XRI1
ath-e.2
for
XRI1
ath-m.4.bio
for
XRI1
ath-m.4.hor
for
XRI1
ath-m.4.lig
for
XRI1
ath-m.4.str
for
XRI1
ath-m.4.tis
for
XRI1
bra-r.6
for
103874983
bra-r.6
for
103837262
bna-r.1
for
106428112
bna-r.1
for
106348905
ghi-r.1
for
107925720
ghi-r.1
for
107962811
ghi-r.1
for
107955247
cit-r.1
for
102612966
cit-r.1
for
102625652
gma-u.5
for
100819560
gma-u.5
for
100813418
gma-u.5
for
100791247
ppo-u.5
for
7471150
mtr-u.5
for
25500347
mtr-u.5
for
25498304
sly-u.5
for
101252119
sly-u.5
for
101248986
sot-r.1
for
102585955
sot-r.1
for
102593737
nta-r.1
for
107759756
nta-r.1
for
107774590
nta-r.1
for
107795269
osa-u.5
for
4324358
zma-u.5
for
100280154
tae-r.2
for
123071973
tae-r.2
for
123080278
tae-r.2
for
123063077
hvu-r.1
for
123445212
sbi-r.1
for
8059359
bdi-r.1
for
100843140


Ortholog ID: 4630
Species ath bra bra bna bna ghi ghi ghi cit cit gma gma gma ppo mtr mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol XRI1 LOC103874983 LOC103837262 LOC106348905 LOC106365803 LOC107955247 LOC107944107 LOC107938997 LOC102612966 LOC102625652 LOC100819560 LOC100813418 LOC100779466 LOC7471150 LOC25500347 LOC25498304 LOC101252119 LOC101248986 LOC102585955 LOC102593737 LOC107759756 LOC107774590 LOC107795269 LOC4324358 LOC100280154 LOC123071973 LOC123080278 LOC123063077 LOC123445212 LOC8059359 LOC100843140
Function* x-ray induced transcript 1 protein XRI1 protein XRI1 protein XRI1-like protein XRI1 protein XRI1 protein XRI1 protein XRI1 protein XRI1-like protein XRI1 protein XRI1 protein XRI1 protein XRI1 protein XRI1 protein XRI1 protein XRI1 protein XRI1 protein XRI1 protein XRI1-like protein XRI1 protein XRI1-like protein XRI1 protein XRI1-like protein XRI1 uncharacterized LOC100280154 protein XRI1 protein XRI1 protein XRI1 protein XRI1-like protein XRI1 protein XRI1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 4
ath03460 Fanconi anemia pathway 3
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr04141 Protein processing in endoplasmic reticulum 2
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
mtr01240 Biosynthesis of cofactors 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03460 Fanconi anemia pathway 3
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
nta04122 Sulfur relay system 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00710 Carbon fixation by Calvin cycle 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834930 103874983 103837262 106348905 106365803 107955247 107944107 107938997 102612966 102625652 100819560 100813418 100779466 7471150 25500347 25498304 101252119 101248986 102585955 102593737 107759756 107774590 107795269 4324358 100280154 123071973 123080278 123063077 123445212 8059359 100843140
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