ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	emb2731	Uncharacterized protein family (UPF0172)
ath-r.7	emb2731	Uncharacterized protein family (UPF0172)
ath-m.9	emb2731	Uncharacterized protein family (UPF0172)
ath-e.2	emb2731	Uncharacterized protein family (UPF0172)
ath-m.4.bio	emb2731	Uncharacterized protein family (UPF0172)
ath-m.4.hor	emb2731	Uncharacterized protein family (UPF0172)
ath-m.4.lig	emb2731	Uncharacterized protein family (UPF0172)
ath-m.4.str	emb2731	Uncharacterized protein family (UPF0172)
ath-m.4.tis	emb2731	Uncharacterized protein family (UPF0172)
bra-r.6	103856959	ER membrane protein complex subunit 8/9 homolog
bra-r.6	103845030	ER membrane protein complex subunit 8/9 homolog
bra-r.6	103851854	ER membrane protein complex subunit 8/9 homolog
bna-r.1	106447650	ER membrane protein complex subunit 8/9 homolog
bna-r.1	106397381	ER membrane protein complex subunit 8/9 homolog
bna-r.1	106380871	ER membrane protein complex subunit 8/9 homolog
ghi-r.1	107931188	ER membrane protein complex subunit 8/9 homolog
ghi-r.1	107922609	ER membrane protein complex subunit 8/9 homolog
cit-r.1	102618609	ER membrane protein complex subunit 8/9 homolog
gma-u.5	100527135	uncharacterized LOC100527135
gma-u.5	100306212	uncharacterized LOC100306212
vvi-u.5	100242919	ER membrane protein complex subunit 8/9 homolog
ppo-u.5	7487556	ER membrane protein complex subunit 8/9 homolog
mtr-u.5	11433699	ER membrane protein complex subunit 8/9 homolog
sly-u.5	101244326	ER membrane protein complex subunit 8/9 homolog
sly-u.5	101268196	ER membrane protein complex subunit 8/9 homolog
sot-r.1	102580872	ER membrane protein complex subunit 8/9 homolog
sot-r.1	102599477	ER membrane protein complex subunit 8/9 homolog
nta-r.1	107764945	ER membrane protein complex subunit 8/9 homolog
nta-r.1	107775949	ER membrane protein complex subunit 8/9 homolog
nta-r.1	107807154	ER membrane protein complex subunit 8/9 homolog
osa-u.5	4335339	ER membrane protein complex subunit 8/9 homolog
zma-u.5	100276147	uncharacterized LOC100276147
tae-r.2	123043473	ER membrane protein complex subunit 8/9 homolog
tae-r.2	123051333	ER membrane protein complex subunit 8/9 homolog
tae-r.2	123067491	uncharacterized LOC123067491
hvu-r.1	123424568	ER membrane protein complex subunit 8/9 homolog
sbi-r.1	110435569	ER membrane protein complex subunit 8/9 homolog
sbi-r.1	8069431	ER membrane protein complex subunit 8/9 homolog
bdi-r.1	100841998	ER membrane protein complex subunit 8/9 homolog
cre-r.1	CHLRE_05g240550v5	uncharacterized protein

Top 50 coexpressed genes to emb2731 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to emb2731 (ath-u.5 coexpression data)

CoexMap"835692"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0009793 [list] [network] embryo development ending in seed dormancy

(569 genes)

NAS

GO CC

GO:0005783 [list] [network] endoplasmic reticulum	(897 genes)	HDA
GO:0009536 [list] [network] plastid	(5443 genes)	HDA

GO MF

Protein

NP_568832.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 1, mito 1, extr 1, chlo 1, cysk 1, golg 1, cyto_mito 1, nucl_plas 1, mito_plas 1

(predict for NP_568832.1)

Subcellular
localization
TargetP

other 7, mito 4

(predict for NP_568832.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for emb2731	ath-r.7 for emb2731	ath-m.9 for emb2731	ath-e.2 for emb2731	ath-m.4.bio for emb2731	ath-m.4.hor for emb2731	ath-m.4.lig for emb2731	ath-m.4.str for emb2731	ath-m.4.tis for emb2731	bra-r.6 for 103856959	bra-r.6 for 103845030	bra-r.6 for 103851854	bna-r.1 for 106447650	bna-r.1 for 106397381	bna-r.1 for 106380871	ghi-r.1 for 107931188	ghi-r.1 for 107922609	cit-r.1 for 102618609	gma-u.5 for 100527135	gma-u.5 for 100306212	vvi-u.5 for 100242919	ppo-u.5 for 7487556	mtr-u.5 for 11433699	sly-u.5 for 101244326	sly-u.5 for 101268196	sot-r.1 for 102580872	sot-r.1 for 102599477	nta-r.1 for 107764945	nta-r.1 for 107775949	nta-r.1 for 107807154	osa-u.5 for 4335339	zma-u.5 for 100276147	tae-r.2 for 123043473	tae-r.2 for 123051333	tae-r.2 for 123067491	hvu-r.1 for 123424568	sbi-r.1 for 110435569	sbi-r.1 for 8069431	bdi-r.1 for 100841998	cre-r.1 for CHLRE_05g240550v5

Ortholog

Ortholog ID: 5185

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

emb2731

Function^*

Uncharacterized protein family (UPF0172)

ER membrane protein complex subunit 8/9 homolog

uncharacterized LOC100527135

uncharacterized LOC100306212

ER membrane protein complex subunit 8/9 homolog

uncharacterized LOC100276147

ER membrane protein complex subunit 8/9 homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	5
bra04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	3
bra01200	Carbon metabolism	3
bra00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	2
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	6
ghi00190	Oxidative phosphorylation	5
ghi00230	Purine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	6
ghi00190	Oxidative phosphorylation	5
ghi00230	Purine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	3
gma00010	Glycolysis / Gluconeogenesis	2
gma00620	Pyruvate metabolism	2
gma01200	Carbon metabolism	2
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00010	Glycolysis / Gluconeogenesis	4
gma00620	Pyruvate metabolism	4
gma01200	Carbon metabolism	4
gma04141	Protein processing in endoplasmic reticulum	2
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	3
vvi03013	Nucleocytoplasmic transport	2
vvi03015	mRNA surveillance pathway	2
vvi03040	Spliceosome	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	6
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	10
mtr04141	Protein processing in endoplasmic reticulum	4
mtr00510	N-Glycan biosynthesis	2
mtr00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	7
sly00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00020	Citrate cycle (TCA cycle)	3
sot01200	Carbon metabolism	3
sot00190	Oxidative phosphorylation	2
sot04142	Lysosome	2
sot00640	Propanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	8
nta03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	8
nta03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	8
osa04141	Protein processing in endoplasmic reticulum	3
osa04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00020	Citrate cycle (TCA cycle)	4
zma01200	Carbon metabolism	4
zma01210	2-Oxocarboxylic acid metabolism	4
zma04142	Lysosome	3
zma00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	5
sbi04145	Phagosome	3
sbi04130	SNARE interactions in vesicular transport	2
sbi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	8
sbi04145	Phagosome	4
sbi03060	Protein export	3
sbi04130	SNARE interactions in vesicular transport	2
sbi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	5
bdi03060	Protein export	4
bdi03050	Proteasome	4
bdi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	9
cre03050	Proteasome	6

Expression

Expression pattern

Entrez Gene ID^*

835692

103856959

103845030

103851854

106447650

106380871

125584212

107931188

107922609

102618609

100527135

100306212

100242919

7487556

11433699

101244326

101268196

102580872

102599477

107764945

107775949

107807154

4335339

100276147

123051333

123084038

123187285

123424568

110435569

8069431

100841998

5723265

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	3	3	2	1	2	1	1	1	2	2	3	1	1	3	1	2	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to emb2731 (ath-u.5 coexpression data)

Top 50 enrichment test to emb2731 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**