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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5  MSI1  Transducin/WD40 repeat-like superfamily protein 
 ath-r.7  MSI1  Transducin/WD40 repeat-like superfamily protein 
 ath-m.9  MSI1  Transducin/WD40 repeat-like superfamily protein 
 ath-e.2  MSI1  Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.bio  MSI1  Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.hor  MSI1  Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.lig  MSI1  Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.str  MSI1  Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.tis  MSI1  Transducin/WD40 repeat-like superfamily protein 
 ath-u.5  MSI3  Transducin family protein / WD-40 repeat family protein 
 ath-u.5  MSI2  Transducin family protein / WD-40 repeat family protein 
 bra-r.6  103837783  WD-40 repeat-containing protein MSI2 
 bra-r.6  103851650  histone-binding protein MSI1-like 
 bra-r.6  103846012  WD-40 repeat-containing protein MSI2 
 bna-r.1  125576673  WD-40 repeat-containing protein MSI2 
 bna-r.1  106435642  histone-binding protein MSI1 
 bna-r.1  106426050  histone-binding protein MSI1 
 ghi-r.1  107936990  WD-40 repeat-containing protein MSI3 
 ghi-r.1  107933309  WD-40 repeat-containing protein MSI1 
 ghi-r.1  107928902  WD-40 repeat-containing protein MSI3 
 cit-r.1  102608815  WD-40 repeat-containing protein MSI1 
 cit-r.1  102628661  WD-40 repeat-containing protein MSI3 
 gma-u.5  100799018  WD-40 repeat-containing protein MSI3 
 gma-u.5  100791834  WD-40 repeat-containing protein MSI2-like 
 gma-u.5  100127416  MSI1 
 vvi-u.5  100247592  WD-40 repeat-containing protein MSI1 
 vvi-u.5  100265787  WD-40 repeat-containing protein MSI3 
 ppo-u.5  7481463  WD-40 repeat-containing protein MSI1 
 ppo-u.5  7470405  WD-40 repeat-containing protein MSI3 
 ppo-u.5  7469389  WD-40 repeat-containing protein MSI1 
 mtr-u.5  11440234  WD-40 repeat-containing protein MSI3 
 mtr-u.5  11407768  WD-40 repeat-containing protein MSI1 
 sly-u.5  101266569  WD-40 repeat-containing protein MSI2 
 sly-u.5  MSI1  WD-40 repeat-containing protein MSI1 
 sot-r.1  102599978  WD-40 repeat-containing protein MSI2-like 
 sot-r.1  102593580  WD-40 repeat-containing protein MSI1 
 nta-r.1  107828333  histone-binding protein MSI1 
 nta-r.1  107765912  WD-40 repeat-containing protein MSI2 
 nta-r.1  107804023  histone-binding protein MSI1 
 osa-u.5  4347727  WD-40 repeat-containing protein MSI3 
 osa-u.5  4333540  histone-binding protein MSI1 homolog 
 zma-u.5  103643702  histone-binding protein MSI1 homolog 
 zma-u.5  118476057  uncharacterized LOC118476057 
 zma-u.5  542545  MSI type nucleosome/chromatin assembly factor C 
 tae-r.2  123113217  histone-binding protein MSI1 homolog 
 tae-r.2  123112892  histone-binding protein MSI1 
 tae-r.2  123104623  histone-binding protein MSI1 
 hvu-r.1  123452123  histone-binding protein MSI1 homolog 
 hvu-r.1  123400180  histone-binding protein MSI1 homolog 
 sbi-r.1  8062219  histone-binding protein MSI1 homolog 
 sbi-r.1  8067288  histone-binding protein MSI1 homolog 
 bdi-r.1  100842169  histone-binding protein MSI1 
 bdi-r.1  100837145  histone-binding protein MSI1 homolog 
 cre-r.1  CHLRE_12g523200v5  uncharacterized protein 

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Top 50 coexpressed genes to MSI1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to MSI1 (ath-u.5 coexpression data)

CoexMap"835935"


athMSI1 | Entrez gene ID : 835935
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 2 3 2 3 2 2 2 3 2 3 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
ath03083 [list] [network] Polycomb repressive complex (65 genes)
GO BP
GO:0016480 [list] [network] negative regulation of transcription by RNA polymerase III  (2 genes)  IPI  
GO:0045787 [list] [network] positive regulation of cell cycle  (29 genes)  IGI  
GO:0010214 [list] [network] seed coat development  (51 genes)  IMP  
GO:0031507 [list] [network] heterochromatin formation  (74 genes)  IMP  
GO:0070828 [list] [network] heterochromatin organization  (77 genes)  IMP  
GO:0010026 [list] [network] trichome differentiation  (86 genes)  IMP  
GO:0009909 [list] [network] regulation of flower development  (163 genes)  IMP  
GO:0048366 [list] [network] leaf development  (371 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IGI IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP  
GO:0048316 [list] [network] seed development  (775 genes)  IMP  
GO:0007275 [list] [network] multicellular organism development  (2630 genes)  IMP  
GO CC
GO:0005677 [list] [network] chromatin silencing complex  (8 genes)  IDA  
GO:0070176 [list] [network] DRM complex  (15 genes)  IDA  
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0032991 [list] [network] protein-containing complex  (1548 genes)  IPI  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM TAS  
GO MF
GO:0001222 [list] [network] transcription corepressor binding  (13 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_200631.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  cyto 1  (predict for NP_200631.1)
Subcellular
localization
TargetP
other 9  (predict for NP_200631.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Condition-specific* Reference

ath-u.5
for
MSI1


ath-r.7
for
MSI1


ath-m.9
for
MSI1


ath-e.2
for
MSI1


ath-m.4.bio
for
MSI1


ath-m.4.hor
for
MSI1


ath-m.4.lig
for
MSI1


ath-m.4.str
for
MSI1


ath-m.4.tis
for
MSI1


ath-u.5
for
MSI3


ath-u.5
for
MSI2


bra-r.6
for
103837783


bra-r.6
for
103851650


bra-r.6
for
103846012


bna-r.1
for
125576673


bna-r.1
for
106435642


bna-r.1
for
106426050


ghi-r.1
for
107936990


ghi-r.1
for
107933309


ghi-r.1
for
107928902


cit-r.1
for
102608815


cit-r.1
for
102628661


gma-u.5
for
100799018


gma-u.5
for
100791834


gma-u.5
for
100127416


vvi-u.5
for
100247592


vvi-u.5
for
100265787


ppo-u.5
for
7481463


ppo-u.5
for
7470405


ppo-u.5
for
7469389


mtr-u.5
for
11440234


mtr-u.5
for
11407768


sly-u.5
for
101266569


sly-u.5
for
MSI1


sot-r.1
for
102599978


sot-r.1
for
102593580


nta-r.1
for
107828333


nta-r.1
for
107765912


nta-r.1
for
107804023


osa-u.5
for
4347727


osa-u.5
for
4333540


zma-u.5
for
103643702


zma-u.5
for
118476057


zma-u.5
for
542545


tae-r.2
for
123113217


tae-r.2
for
123112892


tae-r.2
for
123104623


hvu-r.1
for
123452123


hvu-r.1
for
123400180


sbi-r.1
for
8062219


sbi-r.1
for
8067288


bdi-r.1
for
100842169


bdi-r.1
for
100837145


cre-r.1
for
CHLRE_12g523200v5



Ortholog ID: 2199
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol MSI1 MSI3 MSI2 LOC103837783 LOC103846012 LOC103856707 LOC106420262 LOC106347047 LOC106388250 LOC107933309 LOC107928902 LOC107920532 LOC102608815 LOC102628661 LOC100799018 LOC100791834 LOC100796217 LOC100247592 LOC100265787 LOC7470405 LOC7469389 LOC7494244 LOC11440234 LOC11407768 LOC101266569 MSI1 LOC102599978 LOC102593580 LOC107828333 LOC107804023 LOC107828303 LOC4347727 LOC4333540 LOC103643702 LOC118476057 LOC103628047 LOC123113217 LOC123104623 LOC123122733 LOC123452123 LOC123400180 LOC8062219 LOC8067288 LOC100842169 LOC100837145 CHLRE_12g523200v5
Function* Transducin/WD40 repeat-like superfamily protein Transducin family protein / WD-40 repeat family protein Transducin family protein / WD-40 repeat family protein WD-40 repeat-containing protein MSI2 WD-40 repeat-containing protein MSI2 histone-binding protein MSI1 histone-binding protein MSI1-like WD-40 repeat-containing protein MSI2 histone-binding protein MSI1 WD-40 repeat-containing protein MSI1 WD-40 repeat-containing protein MSI3 WD-40 repeat-containing protein MSI1 WD-40 repeat-containing protein MSI1 WD-40 repeat-containing protein MSI3 WD-40 repeat-containing protein MSI3 WD-40 repeat-containing protein MSI2-like WD-40 repeat-containing protein MSI1 WD-40 repeat-containing protein MSI1 WD-40 repeat-containing protein MSI3 WD-40 repeat-containing protein MSI3 WD-40 repeat-containing protein MSI1 WD-40 repeat-containing protein MSI2 WD-40 repeat-containing protein MSI3 WD-40 repeat-containing protein MSI1 WD-40 repeat-containing protein MSI2 WD-40 repeat-containing protein MSI1 WD-40 repeat-containing protein MSI2-like WD-40 repeat-containing protein MSI1 histone-binding protein MSI1 histone-binding protein MSI1 WD-40 repeat-containing protein MSI2 WD-40 repeat-containing protein MSI3 histone-binding protein MSI1 homolog histone-binding protein MSI1 homolog uncharacterized LOC118476057 histone-binding protein MSI1 homolog histone-binding protein MSI1 homolog histone-binding protein MSI1 histone-binding protein MSI1 homolog histone-binding protein MSI1 homolog histone-binding protein MSI1 homolog histone-binding protein MSI1 homolog histone-binding protein MSI1 homolog histone-binding protein MSI1 histone-binding protein MSI1 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 9
ath03082 ATP-dependent chromatin remodeling 4
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 3
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 6
bra03440 Homologous recombination 2
bra03460 Fanconi anemia pathway 2
bra03082 ATP-dependent chromatin remodeling 2
bra03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03440 Homologous recombination 2
bra03082 ATP-dependent chromatin remodeling 2
bra03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 2
bra04141 Protein processing in endoplasmic reticulum 2
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 6
bna03083 Polycomb repressive complex 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna03083 Polycomb repressive complex 4
bna04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 6
bna03083 Polycomb repressive complex 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
gma03082 ATP-dependent chromatin remodeling 3
gma03083 Polycomb repressive complex 3
gma03030 DNA replication 2
gma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 4
vvi03018 RNA degradation 4
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo04141 Protein processing in endoplasmic reticulum 3
ppo03083 Polycomb repressive complex 3
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
ppo01232 Nucleotide metabolism 2
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 3
mtr03010 Ribosome 3
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 12
sly03420 Nucleotide excision repair 2
sly03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
sot00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 4
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 4
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 7
osa00240 Pyrimidine metabolism 3
osa01232 Nucleotide metabolism 3
osa00230 Purine metabolism 2
osa00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 4
osa03040 Spliceosome 4
osa03015 mRNA surveillance pathway 3
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00010 Glycolysis / Gluconeogenesis 2
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03083 Polycomb repressive complex 6
tae04120 Ubiquitin mediated proteolysis 3
tae03030 DNA replication 2
tae03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 10
tae03410 Base excision repair 4
tae03018 RNA degradation 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 5
tae03083 Polycomb repressive complex 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 3
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi03040 Spliceosome 2
sbi00010 Glycolysis / Gluconeogenesis 2
sbi00620 Pyruvate metabolism 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00240 Pyrimidine metabolism 3
sbi01232 Nucleotide metabolism 3
sbi03030 DNA replication 2
sbi00230 Purine metabolism 2
sbi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
bdi00240 Pyrimidine metabolism 2
bdi00480 Glutathione metabolism 2
bdi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03013 Nucleocytoplasmic transport 4
cre03040 Spliceosome 3
cre03082 ATP-dependent chromatin remodeling 2
cre03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835935 829657 816179 103837783 103846012 103856707 106420262 106347047 106388250 107933309 107928902 107920532 102608815 102628661 100799018 100791834 100796217 100247592 100265787 7470405 7469389 7494244 11440234 11407768 101266569 543534 102599978 102593580 107828333 107804023 107828303 4347727 4333540 103643702 118476057 103628047 123113217 123104623 123122733 123452123 123400180 8062219 8067288 100842169 100837145 5722539
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