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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   HDH   histidinol dehydrogenase 
 ath-r.7   HDH   histidinol dehydrogenase 
 ath-m.9   HDH   histidinol dehydrogenase 
 ath-e.2   HDH   histidinol dehydrogenase 
 ath-m.4.bio   HDH   histidinol dehydrogenase 
 ath-m.4.hor   HDH   histidinol dehydrogenase 
 ath-m.4.lig   HDH   histidinol dehydrogenase 
 ath-m.4.str   HDH   histidinol dehydrogenase 
 ath-m.4.tis   HDH   histidinol dehydrogenase 
 bra-r.6   103873805   histidinol dehydrogenase, chloroplastic 
 bra-r.6   103837505   histidinol dehydrogenase, chloroplastic 
 bna-r.1   106347943   histidinol dehydrogenase, chloroplastic 
 bna-r.1   106406908   histidinol dehydrogenase, chloroplastic 
 bna-r.1   106348076   histidinol dehydrogenase, chloroplastic 
 ghi-r.1   107897037   histidinol dehydrogenase, chloroplastic 
 ghi-r.1   107895145   histidinol dehydrogenase, chloroplastic 
 cit-r.1   102615083   histidinol dehydrogenase, chloroplastic 
 gma-u.5   100816684   histidinol dehydrogenase, chloroplastic 
 gma-u.5   100802665   histidinol dehydrogenase, chloroplastic 
 gma-u.5   100793496   histidinol dehydrogenase, chloroplastic 
 vvi-u.5   100253086   histidinol dehydrogenase, chloroplastic 
 ppo-u.5   18103517   histidinol dehydrogenase, chloroplastic 
 ppo-u.5   7480422   histidinol dehydrogenase, chloroplastic 
 mtr-u.5   11412251   histidinol dehydrogenase, chloroplastic 
 sly-u.5   101243855   histidinol dehydrogenase 
 sot-r.1   102590460   histidinol dehydrogenase, chloroplastic 
 nta-r.1   107770793   histidinol dehydrogenase, chloroplastic 
 nta-r.1   107807270   histidinol dehydrogenase, chloroplastic 
 nta-r.1   107779522   histidinol dehydrogenase, chloroplastic 
 osa-u.5   4324282   histidinol dehydrogenase, chloroplastic-like 
 zma-u.5   100284964   uncharacterized LOC100284964 
 tae-r.2   123189134   histidinol dehydrogenase, chloroplastic 
 tae-r.2   123053221   histidinol dehydrogenase, chloroplastic 
 tae-r.2   123045379   histidinol dehydrogenase, chloroplastic 
 hvu-r.1   123426635   histidinol dehydrogenase, chloroplastic 
 sbi-r.1   110431479   histidinol dehydrogenase, chloroplastic 
 bdi-r.1   100824469   histidinol dehydrogenase, chloroplastic 
 cre-r.1   CHLRE_02g077350v5   uncharacterized protein 

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Top 50 coexpressed genes to HDH (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HDH (ath-u.5 coexpression data)

CoexMap"836509"


athHDH | Entrez gene ID : 836509      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 3 1 2 1 1 1 3 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00340 [list] [network] Histidine metabolism (19 genes)
ath01230 [list] [network] Biosynthesis of amino acids (242 genes)
GO BP
GO:0009411 [list] [network] response to UV  (141 genes)  IEP  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0004399 [list] [network] histidinol dehydrogenase activity  (1 genes)  TAS  
Protein NP_568981.2 [sequence] [blastp]
NP_851260.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for NP_568981.2)
cyto 7,  chlo 2  (predict for NP_851260.1)
Subcellular
localization
TargetP
chlo 6,  mito 4  (predict for NP_568981.2)
other 3  (predict for NP_851260.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
HDH
ath-r.7
for
HDH
ath-m.9
for
HDH
ath-e.2
for
HDH
ath-m.4.bio
for
HDH
ath-m.4.hor
for
HDH
ath-m.4.lig
for
HDH
ath-m.4.str
for
HDH
ath-m.4.tis
for
HDH
bra-r.6
for
103873805
bra-r.6
for
103837505
bna-r.1
for
106347943
bna-r.1
for
106406908
bna-r.1
for
106348076
ghi-r.1
for
107897037
ghi-r.1
for
107895145
cit-r.1
for
102615083
gma-u.5
for
100816684
gma-u.5
for
100802665
gma-u.5
for
100793496
vvi-u.5
for
100253086
ppo-u.5
for
18103517
ppo-u.5
for
7480422
mtr-u.5
for
11412251
sly-u.5
for
101243855
sot-r.1
for
102590460
nta-r.1
for
107770793
nta-r.1
for
107807270
nta-r.1
for
107779522
osa-u.5
for
4324282
zma-u.5
for
100284964
tae-r.2
for
123189134
tae-r.2
for
123053221
tae-r.2
for
123045379
hvu-r.1
for
123426635
sbi-r.1
for
110431479
bdi-r.1
for
100824469
cre-r.1
for
CHLRE_02g077350v5


Ortholog ID: 7009
Species ath bra bra bna bna bna ghi ghi cit gma gma gma vvi ppo ppo mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol HDH LOC103873805 LOC103837505 LOC106347943 LOC106348076 LOC106366261 LOC107897037 LOC107895145 LOC102615083 LOC100816684 LOC100802665 LOC100793496 LOC100253086 LOC18103517 LOC7480422 LOC11412251 LOC101243855 LOC102590460 LOC107770793 LOC107807270 LOC107823137 LOC4324282 LOC100284964 LOC123189134 LOC123053221 LOC123045379 LOC123426635 LOC110431479 LOC100824469 CHLRE_02g077350v5
Function* histidinol dehydrogenase histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic-like histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic-like histidinol dehydrogenase, chloroplastic-like uncharacterized LOC100284964 histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic histidinol dehydrogenase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 8
ath00220 Arginine biosynthesis 3
ath01210 2-Oxocarboxylic acid metabolism 3
ath00300 Lysine biosynthesis 3
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 10
bra01200 Carbon metabolism 6
bra00340 Histidine metabolism 3
bra00010 Glycolysis / Gluconeogenesis 3
bra00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra00340 Histidine metabolism 3
bra01200 Carbon metabolism 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 2
ghi00330 Arginine and proline metabolism 2
ghi00340 Histidine metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 2
ghi00330 Arginine and proline metabolism 2
ghi00340 Histidine metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 5
gma00261 Monobactam biosynthesis 3
gma00300 Lysine biosynthesis 3
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 2
gma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 4
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 3
sot01230 Biosynthesis of amino acids 3
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00340 Histidine metabolism 4
nta01230 Biosynthesis of amino acids 4
nta00970 Aminoacyl-tRNA biosynthesis 3
nta00860 Porphyrin metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00340 Histidine metabolism 4
nta01230 Biosynthesis of amino acids 4
nta00970 Aminoacyl-tRNA biosynthesis 3
nta00860 Porphyrin metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 6
nta00340 Histidine metabolism 4
nta00970 Aminoacyl-tRNA biosynthesis 3
nta00860 Porphyrin metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 7
osa00300 Lysine biosynthesis 5
osa01240 Biosynthesis of cofactors 3
osa00261 Monobactam biosynthesis 2
osa00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 6
zma01210 2-Oxocarboxylic acid metabolism 3
zma00340 Histidine metabolism 3
zma00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 6
tae00750 Vitamin B6 metabolism 5
tae01240 Biosynthesis of cofactors 5
tae00340 Histidine metabolism 3
tae00300 Lysine biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 6
tae00340 Histidine metabolism 3
tae00300 Lysine biosynthesis 3
tae00470 D-Amino acid metabolism 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 6
tae00340 Histidine metabolism 3
tae00300 Lysine biosynthesis 3
tae00470 D-Amino acid metabolism 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 3
sbi00564 Glycerophospholipid metabolism 2
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi01230 Biosynthesis of amino acids 2
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 9
bdi00300 Lysine biosynthesis 5
bdi00250 Alanine, aspartate and glutamate metabolism 3
bdi00220 Arginine biosynthesis 2
bdi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 4
cre00290 Valine, leucine and isoleucine biosynthesis 2
cre00966 Glucosinolate biosynthesis 2
cre01210 2-Oxocarboxylic acid metabolism 2
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836509 103873805 103837505 106347943 106348076 106366261 107897037 107895145 102615083 100816684 100802665 100793496 100253086 18103517 7480422 11412251 101243855 102590460 107770793 107807270 107823137 4324282 100284964 123189134 123053221 123045379 123426635 110431479 100824469 5727230
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