ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT5G66440	tRNA-methyltransferase non-catalytic subunit trm6MTase subunit
ath-r.7	AT5G66440	tRNA-methyltransferase non-catalytic subunit trm6MTase subunit
ath-m.9	AT5G66440	tRNA-methyltransferase non-catalytic subunit trm6MTase subunit
ath-e.2	AT5G66440	tRNA-methyltransferase non-catalytic subunit trm6MTase subunit
ath-m.4.bio	AT5G66440	tRNA-methyltransferase non-catalytic subunit trm6MTase subunit
ath-m.4.hor	AT5G66440	tRNA-methyltransferase non-catalytic subunit trm6MTase subunit
ath-m.4.lig	AT5G66440	tRNA-methyltransferase non-catalytic subunit trm6MTase subunit
ath-m.4.str	AT5G66440	tRNA-methyltransferase non-catalytic subunit trm6MTase subunit
ath-m.4.tis	AT5G66440	tRNA-methyltransferase non-catalytic subunit trm6MTase subunit
ath-u.5	AT4G34560	uncharacterized protein
bra-r.6	108872201	uncharacterized LOC108872201
bra-r.6	103860681	uncharacterized LOC103860681
bra-r.6	103841013	uncharacterized LOC103841013
bna-r.1	125580547	uncharacterized LOC125580547
bna-r.1	111207436	uncharacterized LOC111207436
bna-r.1	106454851	uncharacterized LOC106454851
ghi-r.1	107905914	uncharacterized LOC107905914
ghi-r.1	107890151	uncharacterized LOC107890151
cit-r.1	102623882	uncharacterized LOC102623882
cit-r.1	102630182	uncharacterized LOC102630182
gma-u.5	102665576	uncharacterized LOC102665576
gma-u.5	102663539	uncharacterized LOC102663539
vvi-u.5	100264004	uncharacterized LOC100264004
vvi-u.5	104882563	uncharacterized LOC104882563
ppo-u.5	7461231	uncharacterized LOC7461231
mtr-u.5	25501618	uncharacterized LOC25501618
mtr-u.5	11417250	uncharacterized LOC11417250
mtr-u.5	120576137	uncharacterized LOC120576137
sly-u.5	104645741	uncharacterized LOC104645741
sly-u.5	101244720	uncharacterized LOC101244720
sot-r.1	102592319	uncharacterized LOC102592319
sot-r.1	102592890	uncharacterized LOC102592890
nta-r.1	107794252	uncharacterized LOC107794252
nta-r.1	107766154	uncharacterized LOC107766154
nta-r.1	107782727	uncharacterized LOC107782727

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_201445.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, cyto_plas 3, golg 1, chlo 1, nucl 1, extr 1, vacu 1, E.R. 1, E.R._vacu 1

(predict for NP_201445.1)

Subcellular
localization
TargetP

other 9

(predict for NP_201445.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT5G66440	ath-r.7 for AT5G66440	ath-m.9 for AT5G66440	ath-e.2 for AT5G66440	ath-m.4.bio for AT5G66440	ath-m.4.hor for AT5G66440	ath-m.4.lig for AT5G66440	ath-m.4.str for AT5G66440	ath-m.4.tis for AT5G66440	ath-u.5 for AT4G34560	bra-r.6 for 108872201	bra-r.6 for 103860681	bra-r.6 for 103841013	bna-r.1 for 125580547	bna-r.1 for 111207436	bna-r.1 for 106454851	ghi-r.1 for 107905914	ghi-r.1 for 107890151	cit-r.1 for 102623882	cit-r.1 for 102630182	gma-u.5 for 102665576	gma-u.5 for 102663539	vvi-u.5 for 100264004	vvi-u.5 for 104882563	ppo-u.5 for 7461231	mtr-u.5 for 25501618	mtr-u.5 for 11417250	mtr-u.5 for 120576137	sly-u.5 for 104645741	sly-u.5 for 101244720	sot-r.1 for 102592319	sot-r.1 for 102592890	nta-r.1 for 107794252	nta-r.1 for 107766154	nta-r.1 for 107782727

Ortholog

Ortholog ID: 1633

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

Symbol

Function^*

tRNA-methyltransferase non-catalytic subunit trm6MTase subunit

uncharacterized protein

uncharacterized LOC108872201

uncharacterized LOC103837022

uncharacterized LOC103862353

uncharacterized LOC125580547

uncharacterized LOC111207436

uncharacterized LOC106370562

uncharacterized LOC107927858

uncharacterized LOC107942426

uncharacterized LOC102623882

uncharacterized LOC102630182

uncharacterized LOC102665576

uncharacterized LOC100788284

uncharacterized LOC102669125

uncharacterized LOC100264004

uncharacterized LOC104882563

uncharacterized LOC7461231

uncharacterized LOC11417250

uncharacterized LOC120576137

uncharacterized LOC11414904

uncharacterized LOC101244426

uncharacterized LOC104645423

uncharacterized LOC102592319

uncharacterized LOC107785472

uncharacterized LOC107823640

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	5
bra03420	Nucleotide excision repair	2
bra03430	Mismatch repair	2
bra03440	Homologous recombination	2
bra03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta02010	ABC transporters	2
nta04981	Folate transport and metabolism	2
nta00500	Starch and sucrose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

836776

829608

108872201

103837022

103862353

125580547

111207436

106370562

107927858

107942426

102623882

102630182

102665576

100788284

102669125

100264004

104882563

7461231

11417250

120576137

11414904

101244426

104645423

102592319

107785472

107823640

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT5G66440 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G66440 (ath-u.5 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	sbi	osa	tae	hvu	zma	cre	bdi
Paralog	10	3	3	2	2	2	2	1	3	2	2	3	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G66440 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G66440 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**