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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G09060   JmjC domain protein JMJ24 
 ath-r.7   AT1G09060   JmjC domain protein JMJ24 
 ath-m.9   AT1G09060   JmjC domain protein JMJ24 
 ath-e.2   AT1G09060   JmjC domain protein JMJ24 
 ath-m.4.bio   AT1G09060   JmjC domain protein JMJ24 
 ath-m.4.hor   AT1G09060   JmjC domain protein JMJ24 
 ath-m.4.lig   AT1G09060   JmjC domain protein JMJ24 
 ath-m.4.str   AT1G09060   JmjC domain protein JMJ24 
 ath-m.4.tis   AT1G09060   JmjC domain protein JMJ24 
 gma-u.5   100792166   lysine-specific demethylase JMJ25 
 gma-u.5   100801287   lysine-specific demethylase JMJ25 
 vvi-u.5   100249389   E3 ubiquitin-protein ligase JMJ24 
 ppo-u.5   18098686   E3 ubiquitin-protein ligase JMJ24 
 ppo-u.5   7473273   E3 ubiquitin-protein ligase JMJ24 
 mtr-u.5   11405620   lysine-specific demethylase JMJ25 
 sly-u.5   101261570   E3 ubiquitin-protein ligase JMJ24 
 osa-u.5   4332818   E3 ubiquitin-protein ligase JMJ24 
 zma-u.5   103639146   lysine-specific demethylase JMJ25-like 

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Top 50 coexpressed genes to AT1G09060 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G09060 (ath-u.5 coexpression data)

CoexMap"837427"


athAT1G09060 | Entrez gene ID : 837427      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0090310 [list] [network] negative regulation of DNA methylation-dependent heterochromatin formation  (2 genes)  IMP  
GO:0070920 [list] [network] regulation of regulatory ncRNA processing  (4 genes)  IMP  
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (33 genes)  IDA  
GO:0010628 [list] [network] positive regulation of gene expression  (71 genes)  IMP  
GO:0031507 [list] [network] heterochromatin formation  (74 genes)  IMP  
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IDA  
GO:0040029 [list] [network] epigenetic regulation of gene expression  (174 genes)  IGI IMP  
GO CC
GO:0048188 [list] [network] Set1C/COMPASS complex  (12 genes)  IDA  
GO:0031011 [list] [network] Ino80 complex  (16 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0031624 [list] [network] ubiquitin conjugating enzyme binding  (2 genes)  IPI  
GO:0032451 [list] [network] demethylase activity  (37 genes)  IDA  
GO:0042393 [list] [network] histone binding  (50 genes)  IDA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (83 genes)  IDA  
GO:0005506 [list] [network] iron ion binding  (107 genes)  IDA  
GO:0042803 [list] [network] protein homodimerization activity  (237 genes)  IDA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001031007.1 [sequence] [blastp]
NP_001318961.1 [sequence] [blastp]
NP_172380.2 [sequence] [blastp]
NP_973798.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001031007.1)
nucl 9  (predict for NP_001318961.1)
nucl 9  (predict for NP_172380.2)
nucl 9  (predict for NP_973798.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001031007.1)
other 9  (predict for NP_001318961.1)
other 7,  chlo 4  (predict for NP_172380.2)
other 7,  chlo 4  (predict for NP_973798.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G09060

.
ath-r.7
for
AT1G09060

.
ath-m.9
for
AT1G09060

.
ath-e.2
for
AT1G09060

.
ath-m.4.bio
for
AT1G09060

.
ath-m.4.hor
for
AT1G09060

.
ath-m.4.lig
for
AT1G09060

.
ath-m.4.str
for
AT1G09060

.
ath-m.4.tis
for
AT1G09060

.
gma-u.5
for
100792166

.
gma-u.5
for
100801287

.
vvi-u.5
for
100249389

.
ppo-u.5
for
18098686

.
ppo-u.5
for
7473273

.
mtr-u.5
for
11405620

.
sly-u.5
for
101261570

.
osa-u.5
for
4332818

.
zma-u.5
for
103639146

.


Ortholog ID: 11038
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT1G09060 LOC100801287 LOC100792166 LOC101261570 LOC4332818 LOC103639146 LOC103836361 LOC100249389 LOC7473273 LOC18098686 LOC11405620 LOC123085844 LOC123097453 LOC123448633 LOC107899094 LOC107894236 LOC106453173 LOC106362338 LOC8082299 LOC102579305 LOC102630420 LOC100839939 LOC107826305 LOC107762636
Function* JmjC domain protein JMJ24 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 E3 ubiquitin-protein ligase JMJ24 E3 ubiquitin-protein ligase JMJ24 lysine-specific demethylase JMJ25-like lysine-specific demethylase JMJ25 E3 ubiquitin-protein ligase JMJ24 E3 ubiquitin-protein ligase JMJ24 E3 ubiquitin-protein ligase JMJ24 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25-like lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25-like lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 E3 ubiquitin-protein ligase JMJ24 lysine-specific demethylase JMJ25 E3 ubiquitin-protein ligase JMJ24 E3 ubiquitin-protein ligase JMJ24
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00564 Glycerophospholipid metabolism 2
gma00565 Ether lipid metabolism 2
gma04144 Endocytosis 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
sly04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 3
tae04518 Integrin signaling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 3
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 2
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837427 100801287 100792166 101261570 4332818 103639146 103836361 100249389 7473273 18098686 11405620 123085844 123097453 123448633 107899094 107894236 106453173 106362338 8082299 102579305 102630420 100839939 107826305 107762636
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