ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT1G16840	uncharacterized protein
ath-r.7	AT1G16840	uncharacterized protein
ath-m.9	AT1G16840	uncharacterized protein
ath-e.2	AT1G16840	uncharacterized protein
ath-m.4.bio	AT1G16840	uncharacterized protein
ath-m.4.hor	AT1G16840	uncharacterized protein
ath-m.4.lig	AT1G16840	uncharacterized protein
ath-m.4.str	AT1G16840	uncharacterized protein
ath-m.4.tis	AT1G16840	uncharacterized protein
ath-u.5	AT1G78890	uncharacterized protein
bra-r.6	103872469	uncharacterized LOC103872469
bra-r.6	103832366	uncharacterized LOC103832366
bra-r.6	103842828	uncharacterized LOC103842828
bna-r.1	BNAC05G12850D	uncharacterized BNAC05G12850D
bna-r.1	BNAC08G38150D	uncharacterized BNAC08G38150D
bna-r.1	106354670	uncharacterized LOC106354670
ghi-r.1	107902051	uncharacterized LOC107902051
ghi-r.1	107940294	uncharacterized LOC107940294
ghi-r.1	121212620	uncharacterized LOC121212620
cit-r.1	102619737	uncharacterized LOC102619737
cit-r.1	102628039	uncharacterized LOC102628039
gma-u.5	100305528	uncharacterized LOC100305528
gma-u.5	100815849	uncharacterized LOC100815849
gma-u.5	100814045	uncharacterized LOC100814045
vvi-u.5	100246130	uncharacterized LOC100246130
ppo-u.5	7490500	uncharacterized LOC7490500
ppo-u.5	7469467	uncharacterized LOC7469467
ppo-u.5	7497780	uncharacterized LOC7497780
mtr-u.5	11439673	uncharacterized LOC11439673
sly-u.5	101259857	uncharacterized LOC101259857
sly-u.5	101254704	uncharacterized LOC101254704
sot-r.1	102588642	uncharacterized LOC102588642
sot-r.1	102582434	uncharacterized LOC102582434
nta-r.1	107822935	uncharacterized LOC107822935
nta-r.1	107810892	uncharacterized LOC107810892
nta-r.1	142176452	uncharacterized LOC142176452
osa-u.5	4336919	uncharacterized LOC4336919
osa-u.5	4344991	uncharacterized LOC4344991
zma-u.5	100382565	uncharacterized LOC100382565
zma-u.5	100194258	uncharacterized LOC100194258
zma-u.5	100191378	uncharacterized LOC100191378
tae-r.2	123054374	uncharacterized LOC123054374
tae-r.2	123123190	uncharacterized LOC123123190
tae-r.2	123190253	uncharacterized LOC123190253
hvu-r.1	123398849	uncharacterized LOC123398849
hvu-r.1	123427681	uncharacterized LOC123427681
sbi-r.1	8072304	uncharacterized LOC8072304
sbi-r.1	8086082	uncharacterized LOC8086082
bdi-r.1	100826622	uncharacterized LOC100826622
bdi-r.1	100844999	uncharacterized LOC100844999

Top 50 coexpressed genes to AT1G16840 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G16840 (ath-u.5 coexpression data)

CoexMap"838255"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

Protein

NP_001321908.1 [sequence] [blastp]
NP_564007.1 [sequence] [blastp]
NP_849676.1 [sequence] [blastp]
NP_849677.1 [sequence] [blastp]
NP_973846.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 7, nucl 2	(predict for NP_001321908.1)
mito 6, nucl 2, cyto_nucl 1, chlo 1	(predict for NP_564007.1)
mito 7, nucl 2	(predict for NP_849676.1)
mito 6, nucl 2, cyto_nucl 1, chlo 1	(predict for NP_849677.1)
mito 6, nucl 2, cyto_nucl 1, chlo 1	(predict for NP_973846.1)

Subcellular
localization
TargetP

mito 6	(predict for NP_001321908.1)
mito 6	(predict for NP_564007.1)
mito 6	(predict for NP_849676.1)
mito 6	(predict for NP_849677.1)
mito 6	(predict for NP_973846.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT1G16840	ath-r.7 for AT1G16840	ath-m.9 for AT1G16840	ath-e.2 for AT1G16840	ath-m.4.bio for AT1G16840	ath-m.4.hor for AT1G16840	ath-m.4.lig for AT1G16840	ath-m.4.str for AT1G16840	ath-m.4.tis for AT1G16840	ath-u.5 for AT1G78890	bra-r.6 for 103872469	bra-r.6 for 103832366	bra-r.6 for 103842828	bna-r.1 for BNAC05G12850D	bna-r.1 for BNAC08G38150D	bna-r.1 for 106354670	ghi-r.1 for 107902051	ghi-r.1 for 107940294	ghi-r.1 for 121212620	cit-r.1 for 102619737	cit-r.1 for 102628039	gma-u.5 for 100305528	gma-u.5 for 100815849	gma-u.5 for 100814045	vvi-u.5 for 100246130	ppo-u.5 for 7490500	ppo-u.5 for 7469467	ppo-u.5 for 7497780	mtr-u.5 for 11439673	sly-u.5 for 101259857	sly-u.5 for 101254704	sot-r.1 for 102588642	sot-r.1 for 102582434	nta-r.1 for 107822935	nta-r.1 for 107810892	nta-r.1 for 142176452	osa-u.5 for 4336919	osa-u.5 for 4344991	zma-u.5 for 100382565	zma-u.5 for 100194258	zma-u.5 for 100191378	tae-r.2 for 123054374	tae-r.2 for 123123190	tae-r.2 for 123190253	hvu-r.1 for 123398849	hvu-r.1 for 123427681	sbi-r.1 for 8072304	sbi-r.1 for 8086082	bdi-r.1 for 100826622	bdi-r.1 for 100844999

Ortholog

Ortholog ID: 3392

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized protein

uncharacterized LOC103872469

uncharacterized LOC103832366

uncharacterized LOC103842828

uncharacterized BNAC05G12850D

uncharacterized BNAC08G38150D

uncharacterized BNAANNG13050D

uncharacterized LOC107902051

uncharacterized LOC107930422

uncharacterized LOC107925082

uncharacterized LOC102619737

uncharacterized LOC102628039

uncharacterized LOC100305528

uncharacterized LOC100815849

uncharacterized LOC100814045

uncharacterized LOC100246130

uncharacterized LOC7490500

uncharacterized LOC7469467

uncharacterized LOC7497780

uncharacterized LOC11439673

uncharacterized LOC101259857

uncharacterized LOC101254704

uncharacterized LOC102588642

uncharacterized LOC102582434

uncharacterized LOC107822935

uncharacterized LOC107810892

uncharacterized LOC142176452

uncharacterized LOC4336919

uncharacterized LOC4344991

uncharacterized LOC100382565

uncharacterized LOC100191378

uncharacterized LOC103645967

uncharacterized LOC123054374

uncharacterized LOC123113670

uncharacterized LOC123046518

uncharacterized LOC123398849

uncharacterized LOC123427681

uncharacterized LOC8072304

uncharacterized LOC8086082

uncharacterized LOC100826622

uncharacterized LOC100844999

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	3
gma00920	Sulfur metabolism	3
gma01200	Carbon metabolism	2
gma01230	Biosynthesis of amino acids	2
gma00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00561	Glycerolipid metabolism	2
ppo00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	4
sot04136	Autophagy - other	4
sot04382	Cornified envelope formation	4
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03272	Virion - Hepatitis viruses	3
nta04144	Endocytosis	3
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	3
nta03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00564	Glycerophospholipid metabolism	3
tae00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	11
tae04148	Efferocytosis	5
tae00020	Citrate cycle (TCA cycle)	2
tae01200	Carbon metabolism	2
tae04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00564	Glycerophospholipid metabolism	3
tae00592	alpha-Linolenic acid metabolism	3
tae00071	Fatty acid degradation	2
tae00280	Valine, leucine and isoleucine degradation	2
tae00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	4
hvu04144	Endocytosis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

838255

844226

103872469

103832366

103842828

106365580

106416237

106434930

107902051

107930422

107925082

102619737

102628039

100305528

100815849

100814045

100246130

7490500

7469467

7497780

11439673

101259857

101254704

102588642

102582434

107822935

107810892

142176452

4336919

4344991

100382565

100191378

103645967

123054374

123113670

123046518

123398849

123427681

8072304

8086082

100826622

100844999

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	3	3	3	2	3	1	3	1	2	2	3	2	3	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G16840 (ath-u.5 coexpression data)

Top 50 enrichment test to AT1G16840 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**