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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RABA1b   RAB GTPase homolog A1B 
 ath-r.7   RABA1b   RAB GTPase homolog A1B 
 ath-m.9   RABA1b   RAB GTPase homolog A1B 
 ath-e.2   RABA1b   RAB GTPase homolog A1B 
 ath-m.4.bio   RABA1b   RAB GTPase homolog A1B 
 ath-m.4.hor   RABA1b   RAB GTPase homolog A1B 
 ath-m.4.lig   RABA1b   RAB GTPase homolog A1B 
 ath-m.4.str   RABA1b   RAB GTPase homolog A1B 
 ath-m.4.tis   RABA1b   RAB GTPase homolog A1B 
 ath-u.5   RABA1f   RAB GTPase homolog A1F 
 ath-u.5   ARA-2   Ras-related small GTP-binding family protein 
 ath-u.5   RABA1c   RAB GTPase homolog A1C 
 bra-r.6   103834061   ras-related protein RABA1e-like 
 bra-r.6   103835979   ras-related protein RABA1b 
 bna-r.1   125602411   ras-related protein RABA1d-like 
 bna-r.1   106381679   ras-related protein RABA1c 
 bna-r.1   106381798   ras-related protein RABA1c 
 ghi-r.1   107939203   ras-related protein Rab11B 
 ghi-r.1   107925272   ras-related protein RABA1c 
 ghi-r.1   107925245   ras-related protein RABA1f 
 cit-r.1   102623792   ras-related protein Rab11D 
 cit-r.1   102618870   ras-related protein RABA1f-like 
 cit-r.1   102621472   ras-related protein RABA1f 
 gma-u.5   100305599   uncharacterized LOC100305599 
 gma-u.5   100817378   ras-related protein RABA1f 
 gma-u.5   100306448   Rab GTPase family 11-like protein 
 vvi-u.5   100252396   ras-related protein Rab11B-like 
 vvi-u.5   100249712   ras-related protein RABA1d 
 ppo-u.5   7494608   ras-related protein RABA1f 
 ppo-u.5   7487576   ras-related protein RABA1f 
 mtr-u.5   11416438   ras-related protein RABA1b 
 mtr-u.5   11408702   ras-related protein Rab11D 
 mtr-u.5   11414120   ras-related protein RABA1f 
 sly-u.5   101257485   ras-related protein RABA1f 
 sly-u.5   101254053   ras-related protein RABA1d 
 sly-u.5   101256455   ras-related protein Rab11B 
 sot-r.1   102603516   ras-related protein RABA1f 
 sot-r.1   102591005   ras-related protein RABA1f 
 nta-r.1   107821633   ras-related protein YPT3 
 nta-r.1   107820003   ras-related protein RABA1f 
 nta-r.1   107812322   ras-related protein Rab11B 
 osa-u.5   4339623   ras-related protein RABA1f 
 osa-u.5   4341266   ras-related protein RIC2-like 
 osa-u.5   4346744   ras-related protein RABA1f 
 zma-u.5   100284756   ras-related protein Rab11B 
 zma-u.5   100283582   uncharacterized LOC100283582 
 zma-u.5   100281941   uncharacterized LOC100281941 
 tae-r.2   123062057   ras-related protein RIC2 
 tae-r.2   123068346   ras-related protein RABA1f 
 tae-r.2   123070313   ras-related protein RABA1f 
 hvu-r.1   123444060   ras-related protein RABA1f-like 
 hvu-r.1   123444410   ras-related protein RIC2-like 
 hvu-r.1   123408149   ras-related protein RABA1f-like 
 sbi-r.1   8063601   ras-related protein RABA1f 
 sbi-r.1   8067717   ras-related protein RABA1f 
 sbi-r.1   8061947   ras-related protein RIC2 
 bdi-r.1   100846914   ras-related protein RABA1f 
 bdi-r.1   100826678   ras-related protein RABA1f 
 bdi-r.1   100836958   ras-related protein RIC2 

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Top 50 coexpressed genes to RABA1b (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RABA1b (ath-u.5 coexpression data)

CoexMap"838263"


athRABA1b | Entrez gene ID : 838263    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 2 3 3 3 3 2 2 3 3 2 3 3 3 3 3 3 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0060627 [list] [network] regulation of vesicle-mediated transport  (14 genes)  IDA  
GO:0042538 [list] [network] hyperosmotic salinity response  (57 genes)  IMP  
GO:0006886 [list] [network] intracellular protein transport  (149 genes)  TAS  
GO CC
GO:0005802 [list] [network] trans-Golgi network  (279 genes)  NAS  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0005773 [list] [network] vacuole  (984 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA  
GO MF
GO:0005525 [list] [network] GTP binding  (83 genes)  IDA  
Protein NP_173136.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 3,  cyto_nucl 3,  cyto_E.R. 3,  cyto_plas 3  (predict for NP_173136.1)
Subcellular
localization
TargetP
other 8,  scret 3  (predict for NP_173136.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RABA1b
ath-r.7
for
RABA1b
ath-m.9
for
RABA1b
ath-e.2
for
RABA1b
ath-m.4.bio
for
RABA1b
ath-m.4.hor
for
RABA1b
ath-m.4.lig
for
RABA1b
ath-m.4.str
for
RABA1b
ath-m.4.tis
for
RABA1b
ath-u.5
for
RABA1f
ath-u.5
for
ARA-2
ath-u.5
for
RABA1c
bra-r.6
for
103834061
bra-r.6
for
103835979
bna-r.1
for
125602411
bna-r.1
for
106381679
bna-r.1
for
106381798
ghi-r.1
for
107939203
ghi-r.1
for
107925272
ghi-r.1
for
107925245
cit-r.1
for
102623792
cit-r.1
for
102618870
cit-r.1
for
102621472
gma-u.5
for
100305599
gma-u.5
for
100817378
gma-u.5
for
100306448
vvi-u.5
for
100252396
vvi-u.5
for
100249712
ppo-u.5
for
7494608
ppo-u.5
for
7487576
mtr-u.5
for
11416438
mtr-u.5
for
11408702
mtr-u.5
for
11414120
sly-u.5
for
101257485
sly-u.5
for
101254053
sly-u.5
for
101256455
sot-r.1
for
102603516
sot-r.1
for
102591005
nta-r.1
for
107821633
nta-r.1
for
107820003
nta-r.1
for
107812322
osa-u.5
for
4339623
osa-u.5
for
4341266
osa-u.5
for
4346744
zma-u.5
for
100284756
zma-u.5
for
100283582
zma-u.5
for
100281941
tae-r.2
for
123062057
tae-r.2
for
123068346
tae-r.2
for
123070313
hvu-r.1
for
123444060
hvu-r.1
for
123444410
hvu-r.1
for
123408149
sbi-r.1
for
8063601
sbi-r.1
for
8067717
sbi-r.1
for
8061947
bdi-r.1
for
100846914
bdi-r.1
for
100826678
bdi-r.1
for
100836958


Ortholog ID: 267
Species ath ath bra bra bna bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi ppo ppo mtr mtr mtr sly sly sly sot sot nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi
Symbol ARA-2 RABA1c LOC103842822 LOC103860992 LOC106416150 LOC106431767 LOC106420232 LOC107918341 LOC107909644 LOC107901705 LOC102623792 LOC102621472 LOC102627602 LOC100306448 LOC100527366 LOC100810759 LOC100249712 LOC100264083 LOC7487576 LOC7476322 LOC11408702 LOC11446076 LOC25493057 LOC101257485 LOC101256455 Rab11a LOC102591005 LOC102579756 LOC107821633 LOC107828745 LOC4341266 LOC4346744 LOC4324623 LOC100381498 LOC100193085 LOC100194331 LOC123183114 LOC123145996 LOC123079171 LOC123408149 LOC123450422 LOC123407638 LOC8063601 LOC8067717 LOC8082978 LOC100846914 LOC100826678 LOC100823622
Function* Ras-related small GTP-binding family protein RAB GTPase homolog A1C ras-related protein RABA1b ras-related protein RABA1e ras-related protein RABA1b-like ras-related protein RABA1d ras-related protein RABA1a ras-related protein RABA1f ras-related protein RABA1c ras-related protein RABA1c ras-related protein Rab11D ras-related protein RABA1f ras-related protein RABA1d Rab GTPase family 11-like protein rab GTPase family 11 protein ras-related protein RABA1b-like ras-related protein RABA1d ras-related protein RABA1f ras-related protein RABA1f ras-related protein RABA1d ras-related protein Rab11D ras-related protein RABA1f ras-related protein RABA1f ras-related protein RABA1f ras-related protein Rab11B Rab11 GTPase ras-related protein RABA1f ras-related protein YPT3 ras-related protein YPT3 ras-related protein RABA1d ras-related protein RIC2-like ras-related protein RABA1f ras-related protein RIC2-like uncharacterized LOC100381498 Ras-related protein RABA1f Ras protein RIC2 ras-related protein RABA1f ras-related protein RABA1f ras-related protein RIC2 ras-related protein RABA1f-like ras-related protein RABA1f-like ras-related protein RIC2 ras-related protein RABA1f ras-related protein RABA1f ras-related protein RIC2 ras-related protein RABA1f ras-related protein RABA1f ras-related protein RABA1f
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 3
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
ath04517 IgSF CAM signaling 2
ath05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 3
bra04517 IgSF CAM signaling 3
bra04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00030 Pentose phosphate pathway 3
bra01200 Carbon metabolism 3
bra00195 Photosynthesis 2
bra00710 Carbon fixation by Calvin cycle 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04145 Phagosome 4
bna04148 Efferocytosis 4
bna04517 IgSF CAM signaling 4
bna04518 Integrin signaling 4
bna04620 Toll-like receptor signaling pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00600 Sphingolipid metabolism 2
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 10
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 8
ghi00999 Biosynthesis of various plant secondary metabolites 2
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
ghi04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 8
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
ghi04517 IgSF CAM signaling 2
ghi04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 6
cit04144 Endocytosis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
cit04814 Motor proteins 2
cit00541 Biosynthesis of various nucleotide sugars 2
cit01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04145 Phagosome 5
gma04517 IgSF CAM signaling 5
gma04814 Motor proteins 5
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 4
gma04144 Endocytosis 3
gma03008 Ribosome biogenesis in eukaryotes 3
gma03013 Nucleocytoplasmic transport 3
gma03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 3
gma04144 Endocytosis 2
gma04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 4
vvi03010 Ribosome 2
vvi03013 Nucleocytoplasmic transport 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01250 Biosynthesis of nucleotide sugars 3
vvi00520 Amino sugar and nucleotide sugar metabolism 2
vvi00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 5
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 4
ppo00190 Oxidative phosphorylation 4
ppo04626 Plant-pathogen interaction 3
ppo04016 MAPK signaling pathway - plant 2
ppo04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 2
mtr03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 7
mtr00510 N-Glycan biosynthesis 3
mtr00513 Various types of N-glycan biosynthesis 3
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 4
mtr04144 Endocytosis 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04145 Phagosome 4
sly04517 IgSF CAM signaling 4
sly04814 Motor proteins 4
sly00670 One carbon pool by folate 4
sly01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 5
sot04145 Phagosome 5
sot04517 IgSF CAM signaling 5
sot04814 Motor proteins 5
sot00270 Cysteine and methionine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03050 Proteasome 5
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 3
nta04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
osa03018 RNA degradation 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 4
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 5
zma04016 MAPK signaling pathway - plant 4
zma04070 Phosphatidylinositol signaling system 4
zma04075 Plant hormone signal transduction 4
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae04144 Endocytosis 3
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
tae03018 RNA degradation 3
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
hvu04145 Phagosome 2
hvu00520 Amino sugar and nucleotide sugar metabolism 2
hvu01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03060 Protein export 3
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 6
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 8
sbi00240 Pyrimidine metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 9
sbi00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 5
bdi00520 Amino sugar and nucleotide sugar metabolism 2
bdi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837151 834614 103842822 103860992 106416150 106431767 106420232 107918341 107909644 107901705 102623792 102621472 102627602 100306448 100527366 100810759 100249712 100264083 7487576 7476322 11408702 11446076 25493057 101257485 101256455 543749 102591005 102579756 107821633 107828745 4341266 4346744 4324623 100381498 100193085 100194331 123183114 123145996 123079171 123408149 123450422 123407638 8063601 8067717 8082978 100846914 100826678 100823622
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