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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   UBP1B   oligouridylate binding protein 1B 
 ath-r.7   UBP1B   oligouridylate binding protein 1B 
 ath-m.9   UBP1B   oligouridylate binding protein 1B 
 ath-e.2   UBP1B   oligouridylate binding protein 1B 
 ath-m.4.bio   UBP1B   oligouridylate binding protein 1B 
 ath-m.4.hor   UBP1B   oligouridylate binding protein 1B 
 ath-m.4.lig   UBP1B   oligouridylate binding protein 1B 
 ath-m.4.str   UBP1B   oligouridylate binding protein 1B 
 ath-m.4.tis   UBP1B   oligouridylate binding protein 1B 
 ath-u.5   AT3G14100   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   UBP1A   oligouridylate-binding protein 1A 
 bra-r.6   103832637   oligouridylate-binding protein 1A 
 bra-r.6   103842756   oligouridylate-binding protein 1B 
 bra-r.6   103871079   oligouridylate-binding protein 1A 
 bna-r.1   106345823   oligouridylate-binding protein 1A 
 bna-r.1   106377325   oligouridylate-binding protein 1A 
 bna-r.1   111208720   oligouridylate-binding protein 1B 
 ghi-r.1   107906057   oligouridylate-binding protein 1B 
 ghi-r.1   121218664   oligouridylate-binding protein 1B 
 ghi-r.1   107961639   oligouridylate-binding protein 1 
 cit-r.1   102616329   oligouridylate-binding protein 1B 
 cit-r.1   102630644   oligouridylate-binding protein 1-like 
 gma-u.5   100790916   RNA-binding protein 208 
 gma-u.5   100781227   oligouridylate-binding protein 1B 
 gma-u.5   100803322   oligouridylate-binding protein 1 
 vvi-u.5   100260069   oligouridylate-binding protein 1B 
 vvi-u.5   100259344   oligouridylate-binding protein 1 
 vvi-u.5   100245579   RNA-binding protein 208 
 ppo-u.5   18107569   RNA-binding protein 208 
 ppo-u.5   7475676   oligouridylate-binding protein 1B 
 ppo-u.5   7475076   oligouridylate-binding protein 1B 
 mtr-u.5   11433546   RNA-binding protein 208 
 mtr-u.5   11423046   oligouridylate-binding protein 1B 
 mtr-u.5   11440736   oligouridylate-binding protein 1 
 sly-u.5   101265651   oligouridylate-binding protein 1B 
 sly-u.5   101255280   oligouridylate-binding protein 1B-like 
 sly-u.5   101247634   oligouridylate-binding protein 1 
 sot-r.1   102582636   oligouridylate-binding protein 1-like 
 sot-r.1   102579731   oligouridylate-binding protein 1-like 
 sot-r.1   102577639   oligouridylate binding protein-like protein 
 nta-r.1   107798033   oligouridylate-binding protein 1 
 nta-r.1   107783740   oligouridylate-binding protein 1 
 nta-r.1   107805206   oligouridylate-binding protein 1B-like 
 osa-u.5   4350940   oligouridylate-binding protein 1B 
 osa-u.5   4346063   oligouridylate-binding protein 1B 
 osa-u.5   4343900   oligouridylate-binding protein 1 
 zma-u.5   100282356   uncharacterized LOC100282356 
 zma-u.5   100282102   mRNA 3-UTR binding protein 
 zma-u.5   100283683   uncharacterized LOC100283683 
 tae-r.2   123167501   RNA-binding protein 208 
 tae-r.2   123085953   oligouridylate-binding protein 1B 
 tae-r.2   123052097   oligouridylate-binding protein 1 
 hvu-r.1   123425320   oligouridylate-binding protein 1-like 
 hvu-r.1   123411622   RNA-binding protein 208 
 hvu-r.1   123448427   oligouridylate-binding protein 1B-like 
 sbi-r.1   110435536   oligouridylate-binding protein 1B-like 
 sbi-r.1   8062439   oligouridylate-binding protein 1B 
 bdi-r.1   100828363   oligouridylate-binding protein 1 
 bdi-r.1   100831358   oligouridylate-binding protein 1 
 bdi-r.1   100830774   oligouridylate-binding protein 1 

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Top 50 coexpressed genes to UBP1B (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to UBP1B (ath-u.5 coexpression data)

CoexMap"838309"


athUBP1B | Entrez gene ID : 838309      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 2 3 3 3 3 3 3 3 3 3 3 3 2 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005829 [list] [network] cytosol  (2593 genes)  RCA  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001117301.1 [sequence] [blastp]
NP_564018.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  pero 4  (predict for NP_001117301.1)
nucl 6,  pero 4  (predict for NP_564018.1)
Subcellular
localization
TargetP
mito 7  (predict for NP_001117301.1)
mito 7  (predict for NP_564018.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
UBP1B
ath-r.7
for
UBP1B
ath-m.9
for
UBP1B
ath-e.2
for
UBP1B
ath-m.4.bio
for
UBP1B
ath-m.4.hor
for
UBP1B
ath-m.4.lig
for
UBP1B
ath-m.4.str
for
UBP1B
ath-m.4.tis
for
UBP1B
ath-u.5
for
AT3G14100
ath-u.5
for
UBP1A
bra-r.6
for
103832637
bra-r.6
for
103842756
bra-r.6
for
103871079
bna-r.1
for
106345823
bna-r.1
for
106377325
bna-r.1
for
111208720
ghi-r.1
for
107906057
ghi-r.1
for
121218664
ghi-r.1
for
107961639
cit-r.1
for
102616329
cit-r.1
for
102630644
gma-u.5
for
100790916
gma-u.5
for
100781227
gma-u.5
for
100803322
vvi-u.5
for
100260069
vvi-u.5
for
100259344
vvi-u.5
for
100245579
ppo-u.5
for
18107569
ppo-u.5
for
7475676
ppo-u.5
for
7475076
mtr-u.5
for
11433546
mtr-u.5
for
11423046
mtr-u.5
for
11440736
sly-u.5
for
101265651
sly-u.5
for
101255280
sly-u.5
for
101247634
sot-r.1
for
102582636
sot-r.1
for
102579731
sot-r.1
for
102577639
nta-r.1
for
107798033
nta-r.1
for
107783740
nta-r.1
for
107805206
osa-u.5
for
4350940
osa-u.5
for
4346063
osa-u.5
for
4343900
zma-u.5
for
100282356
zma-u.5
for
100282102
zma-u.5
for
100283683
tae-r.2
for
123167501
tae-r.2
for
123085953
tae-r.2
for
123052097
hvu-r.1
for
123425320
hvu-r.1
for
123411622
hvu-r.1
for
123448427
sbi-r.1
for
110435536
sbi-r.1
for
8062439
bdi-r.1
for
100828363
bdi-r.1
for
100831358
bdi-r.1
for
100830774


Ortholog ID: 1660
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi bdi bdi bdi
Symbol UBP1B AT3G14100 UBP1A LOC103832637 LOC103842756 LOC103871079 LOC106345823 LOC106377325 LOC111208720 LOC107906057 LOC107961639 LOC107897416 LOC102616329 LOC102630644 LOC100790916 LOC100814415 LOC100777108 LOC100260069 LOC100259344 LOC100245579 LOC7475076 LOC18100797 LOC18100308 LOC11433546 LOC11423046 LOC11440736 LOC101255280 LOC101247634 LOC101252661 LOC102582636 LOC102579731 LOC102577639 LOC107798033 LOC107805206 LOC107808300 LOC4350940 LOC4346063 LOC4343900 LOC100282356 LOC100282102 LOC100283683 LOC123167501 LOC123052097 LOC123151447 LOC123425320 LOC123411622 LOC123448427 LOC110435536 LOC8062439 LOC100828363 LOC100831358 LOC100830774
Function* oligouridylate binding protein 1B RNA-binding (RRM/RBD/RNP motifs) family protein oligouridylate-binding protein 1A oligouridylate-binding protein 1A oligouridylate-binding protein 1B oligouridylate-binding protein 1A oligouridylate-binding protein 1A oligouridylate-binding protein 1A oligouridylate-binding protein 1B oligouridylate-binding protein 1B oligouridylate-binding protein 1 oligouridylate-binding protein 1B oligouridylate-binding protein 1B oligouridylate-binding protein 1-like RNA-binding protein 208 oligouridylate-binding protein 1B RNA-binding protein 208 oligouridylate-binding protein 1B oligouridylate-binding protein 1 RNA-binding protein 208 oligouridylate-binding protein 1B RNA-binding protein 208 oligouridylate-binding protein 1 RNA-binding protein 208 oligouridylate-binding protein 1B oligouridylate-binding protein 1 oligouridylate-binding protein 1B-like oligouridylate-binding protein 1 oligouridylate-binding protein 1 oligouridylate-binding protein 1-like oligouridylate-binding protein 1-like oligouridylate binding protein-like protein oligouridylate-binding protein 1 oligouridylate-binding protein 1B-like oligouridylate-binding protein 1B oligouridylate-binding protein 1B oligouridylate-binding protein 1B oligouridylate-binding protein 1 uncharacterized LOC100282356 mRNA 3-UTR binding protein uncharacterized LOC100283683 RNA-binding protein 208 oligouridylate-binding protein 1 RNA-binding protein 208 oligouridylate-binding protein 1-like RNA-binding protein 208 oligouridylate-binding protein 1B-like oligouridylate-binding protein 1B-like oligouridylate-binding protein 1B oligouridylate-binding protein 1 oligouridylate-binding protein 1 oligouridylate-binding protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 3
bra00561 Glycerolipid metabolism 2
bra00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi00561 Glycerolipid metabolism 2
ghi00564 Glycerophospholipid metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00561 Glycerolipid metabolism 2
ghi00564 Glycerophospholipid metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma00564 Glycerophospholipid metabolism 2
gma03083 Polycomb repressive complex 2
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma04712 Circadian rhythm - plant 2
gma00514 Other types of O-glycan biosynthesis 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 3
vvi04141 Protein processing in endoplasmic reticulum 2
vvi04142 Lysosome 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00220 Arginine biosynthesis 2
ppo00250 Alanine, aspartate and glutamate metabolism 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
ppo00910 Nitrogen metabolism 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 5
mtr00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03420 Nucleotide excision repair 3
mtr03040 Spliceosome 3
mtr03010 Ribosome 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
mtr04141 Protein processing in endoplasmic reticulum 4
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 6
sly00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03015 mRNA surveillance pathway 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 3
sot00190 Oxidative phosphorylation 3
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 4
sot04144 Endocytosis 4
sot03008 Ribosome biogenesis in eukaryotes 3
sot03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 4
nta00240 Pyrimidine metabolism 2
nta03040 Spliceosome 2
nta03083 Polycomb repressive complex 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 6
nta04070 Phosphatidylinositol signaling system 6
nta04075 Plant hormone signal transduction 6
nta04626 Plant-pathogen interaction 6
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 4
nta04070 Phosphatidylinositol signaling system 4
nta04075 Plant hormone signal transduction 4
nta04626 Plant-pathogen interaction 4
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa01200 Carbon metabolism 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma03083 Polycomb repressive complex 3
zma04712 Circadian rhythm - plant 3
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
tae03015 mRNA surveillance pathway 3
tae04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 4
tae03015 mRNA surveillance pathway 4
tae04382 Cornified envelope formation 3
tae03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
hvu04626 Plant-pathogen interaction 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 8
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 4
sbi04136 Autophagy - other 3
sbi03083 Polycomb repressive complex 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04016 MAPK signaling pathway - plant 3
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838309 820626 841846 103832637 103842756 103871079 106345823 106377325 111208720 107906057 107961639 107897416 102616329 102630644 100790916 100814415 100777108 100260069 100259344 100245579 7475076 18100797 18100308 11433546 11423046 11440736 101255280 101247634 101252661 102582636 102579731 102577639 107798033 107805206 107808300 4350940 4346063 4343900 100282356 100282102 100283683 123167501 123052097 123151447 123425320 123411622 123448427 110435536 8062439 100828363 100831358 100830774
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