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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PDIL1-1   PDI-like 1-1 
 ath-r.7   PDIL1-1   PDI-like 1-1 
 ath-m.9   PDIL1-1   PDI-like 1-1 
 ath-e.2   PDIL1-1   PDI-like 1-1 
 ath-m.4.bio   PDIL1-1   PDI-like 1-1 
 ath-m.4.hor   PDIL1-1   PDI-like 1-1 
 ath-m.4.lig   PDIL1-1   PDI-like 1-1 
 ath-m.4.str   PDIL1-1   PDI-like 1-1 
 ath-m.4.tis   PDIL1-1   PDI-like 1-1 
 ath-u.5   PDIL1-2   PDI-like 1-2 
 gma-u.5   100170705   protein disulfide isomerase-like protein 
 gma-u.5   100789569   protein disulfide-isomerase 
 gma-u.5   100788702   protein disulfide-isomerase 
 vvi-u.5   100259138   protein disulfide-isomerase 
 ppo-u.5   7466459   protein disulfide-isomerase 
 mtr-u.5   25489685   protein disulfide-isomerase 
 sly-u.5   101262921   protein disulfide-isomerase 
 sly-u.5   101244079   protein disulfide-isomerase 
 sly-u.5   101262222   protein disulfide-isomerase 
 osa-u.5   4350002   protein disulfide isomerase-like 1-1 
 osa-u.5   4335906   protein disulfide isomerase-like 1-2 
 osa-u.5   4329652   protein disulfide isomerase-like 1-3 
 zma-u.5   606409   protein disulfide isomerase 
 zma-u.5   606410   protein disulfide isomerase 2 
 zma-u.5   103641662   protein disulfide isomerase-like 1-2 

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Top 50 coexpressed genes to PDIL1-1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PDIL1-1 (ath-u.5 coexpression data)

CoexMap"838779"


athPDIL1-1 | Entrez gene ID : 838779      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 10 3 1 1 1 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04141 [list] [network] Protein processing in endoplasmic reticulum (220 genes)
GO BP
GO:0010043 [list] [network] response to zinc ion  (51 genes)  IEP  
GO:0034976 [list] [network] response to endoplasmic reticulum stress  (55 genes)  IEP  
GO:0043067 [list] [network] regulation of programmed cell death  (84 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP  
GO:0048316 [list] [network] seed development  (775 genes)  IMP  
GO CC
GO:0000327 [list] [network] lytic vacuole within protein storage vacuole  (1 genes)  IDA  
GO:0000326 [list] [network] protein storage vacuole  (13 genes)  IDA  
GO:0099503 [list] [network] secretory vesicle  (172 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0005783 [list] [network] endoplasmic reticulum  (897 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  RCA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA  
GO MF
GO:0003756 [list] [network] protein disulfide isomerase activity  (18 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_173594.1 [sequence] [blastp]
NP_849696.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  vacu 2,  E.R. 2,  E.R._vacu 2  (predict for NP_173594.1)
chlo 4,  vacu 3,  nucl 1,  extr 1,  E.R. 1,  golg 1  (predict for NP_849696.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_173594.1)
scret 9  (predict for NP_849696.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PDIL1-1

.
ath-r.7
for
PDIL1-1

.
ath-m.9
for
PDIL1-1

.
ath-e.2
for
PDIL1-1

.
ath-m.4.bio
for
PDIL1-1

.
ath-m.4.hor
for
PDIL1-1

.
ath-m.4.lig
for
PDIL1-1

.
ath-m.4.str
for
PDIL1-1

.
ath-m.4.tis
for
PDIL1-1

.
ath-u.5
for
PDIL1-2

.
gma-u.5
for
100170705

.
gma-u.5
for
100789569

.
gma-u.5
for
100788702

.
vvi-u.5
for
100259138

.
ppo-u.5
for
7466459

.
mtr-u.5
for
25489685

.
sly-u.5
for
101262921

.
sly-u.5
for
101244079

.
sly-u.5
for
101262222

.
osa-u.5
for
4350002

.
osa-u.5
for
4335906

.
osa-u.5
for
4329652

.
zma-u.5
for
606409

.
zma-u.5
for
606410

.
zma-u.5
for
103641662

.


Ortholog ID: 2161
Species ath gma gma sly sly osa osa zma zma bra bra vvi ppo mtr hvu ghi ghi bna bna sbi sbi sot sot cit bdi bdi nta
Symbol PDIL1-2 LOC100789569 LOC100788687 LOC101262921 LOC101262222 LOC4335906 LOC4350002 LOC103641662 LOC606409 LOC103853076 LOC103835729 LOC100259138 LOC7466459 LOC25489685 LOC123447910 LOC107924246 LOC107922505 LOC106351620 LOC106399787 LOC110435598 LOC8080314 LOC102594080 LOC102592089 LOC102609645 LOC100839875 LOC100846545 LOC107832078
Function* PDI-like 1-2 protein disulfide-isomerase protein disulfide-isomerase protein disulfide-isomerase protein disulfide-isomerase protein disulfide isomerase-like 1-2 protein disulfide isomerase-like 1-1 protein disulfide isomerase-like 1-2 protein disulfide isomerase protein disulfide isomerase-like 1-2 protein disulfide isomerase-like 1-1 protein disulfide-isomerase protein disulfide-isomerase protein disulfide-isomerase protein disulfide-isomerase protein disulfide-isomerase protein disulfide-isomerase protein disulfide isomerase-like 1-1 protein disulfide isomerase-like 1-1 protein disulfide-isomerase protein disulfide isomerase-like 1-2 protein disulfide-isomerase-like protein disulfide-isomerase-like protein disulfide-isomerase protein disulfide isomerase-like 1-2 protein disulfide-isomerase protein disulfide-isomerase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 19
ath04145 Phagosome 7
ath03060 Protein export 6
ath04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
gma00010 Glycolysis / Gluconeogenesis 2
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 14
gma04145 Phagosome 7
gma03060 Protein export 5
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 12
sly04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 13
sly03060 Protein export 4
sly04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 14
osa04145 Phagosome 5
osa03060 Protein export 4
osa04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 15
zma03060 Protein export 4
zma04145 Phagosome 3
zma04148 Efferocytosis 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 14
bra03060 Protein export 4
bra04145 Phagosome 4
bra00520 Amino sugar and nucleotide sugar metabolism 3
bra01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 8
vvi00010 Glycolysis / Gluconeogenesis 7
vvi01230 Biosynthesis of amino acids 7
vvi04141 Protein processing in endoplasmic reticulum 6
vvi00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 10
ppo04145 Phagosome 3
ppo00510 N-Glycan biosynthesis 2
ppo00513 Various types of N-glycan biosynthesis 2
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 12
mtr03060 Protein export 6
mtr04145 Phagosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 10
hvu04145 Phagosome 4
hvu04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 4
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 14
ghi04145 Phagosome 7
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 6
bna00100 Steroid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 6
bna00100 Steroid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 12
sbi04145 Phagosome 3
sbi03060 Protein export 3
sbi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 12
sot04145 Phagosome 3
sot04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 13
sot04145 Phagosome 3
sot04626 Plant-pathogen interaction 2
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 10
bdi04145 Phagosome 4
bdi03060 Protein export 3
bdi00510 N-Glycan biosynthesis 2
bdi00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 8
nta00100 Steroid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844087 100789569 100788687 101262921 101262222 4335906 4350002 103641662 606409 103853076 103835729 100259138 7466459 25489685 123447910 107924246 107922505 106351620 106399787 110435598 8080314 102594080 102592089 102609645 100839875 100846545 107832078
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