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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-r.7   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-m.9   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-e.2   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-m.4.bio   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-m.4.hor   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-m.4.lig   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-m.4.str   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-m.4.tis   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 gma-u.5   100801664   mediator of RNA polymerase II transcription subunit 25 
 gma-u.5   100786254   mediator of RNA polymerase II transcription subunit 25 
 vvi-u.5   100259509   mediator of RNA polymerase II transcription subunit 25 
 ppo-u.5   7466913   mediator of RNA polymerase II transcription subunit 25 
 ppo-u.5   7483938   mediator of RNA polymerase II transcription subunit 25-like 
 mtr-u.5   11433176   mediator of RNA polymerase II transcription subunit 25 
 mtr-u.5   25481943   mediator of RNA polymerase II transcription subunit 25 
 sly-u.5   101258928   mediator of RNA polymerase II transcription subunit 25 
 osa-u.5   4346673   mediator of RNA polymerase II transcription subunit 25 
 zma-u.5   103647359   mediator of RNA polymerase II transcription subunit 25 

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Top 50 coexpressed genes to PFT1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PFT1 (ath-u.5 coexpression data)

CoexMap"839141"


athPFT1 | Entrez gene ID : 839141      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 2 1 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1905499 [list] [network] trichome papilla formation  (3 genes)  IMP  
GO:0009585 [list] [network] red, far-red light phototransduction  (20 genes)  IMP  
GO:0010091 [list] [network] trichome branching  (31 genes)  IMP  
GO:0009911 [list] [network] positive regulation of flower development  (44 genes)  IMP  
GO:0010218 [list] [network] response to far red light  (57 genes)  IMP  
GO:0010114 [list] [network] response to red light  (73 genes)  IMP  
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway  (74 genes)  IMP  
GO:0031349 [list] [network] positive regulation of defense response  (125 genes)  IMP  
GO:0009909 [list] [network] regulation of flower development  (163 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IMP  
GO:0050832 [list] [network] defense response to fungus  (282 genes)  IMP  
GO CC
GO:0016592 [list] [network] mediator complex  (45 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003713 [list] [network] transcription coactivator activity  (19 genes)  NAS  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001077596.1 [sequence] [blastp]
NP_173925.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 4  (predict for NP_001077596.1)
nucl 9,  cyto 1  (predict for NP_173925.3)
Subcellular
localization
TargetP
chlo 3,  other 3  (predict for NP_001077596.1)
other 5,  scret 4  (predict for NP_173925.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PFT1

.
ath-r.7
for
PFT1

.
ath-m.9
for
PFT1

.
ath-e.2
for
PFT1

.
ath-m.4.bio
for
PFT1

.
ath-m.4.hor
for
PFT1

.
ath-m.4.lig
for
PFT1

.
ath-m.4.str
for
PFT1

.
ath-m.4.tis
for
PFT1

.
gma-u.5
for
100801664

.
gma-u.5
for
100786254

.
vvi-u.5
for
100259509

.
ppo-u.5
for
7466913

.
ppo-u.5
for
7483938

.
mtr-u.5
for
11433176

.
mtr-u.5
for
25481943

.
sly-u.5
for
101258928

.
osa-u.5
for
4346673

.
zma-u.5
for
103647359

.


Ortholog ID: 5894
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PFT1 LOC100786254 LOC100801664 LOC101258928 LOC4346673 LOC103647359 LOC103835463 LOC103840588 LOC100259509 LOC7483938 LOC7466913 LOC25481943 LOC11433176 LOC123121169 LOC100682446 LOC123452291 LOC107919383 LOC107887167 LOC106361861 LOC106361923 CHLRE_17g736950v5 LOC110432905 LOC102582320 LOC102624904 LOC100843505 LOC107795738 LOC107826460
Function* phytochrome and flowering time regulatory protein (PFT1) mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25-like mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25-like uncharacterized protein mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25-like mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03022 Basal transcription factors 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04814 Motor proteins 2
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi02010 ABC transporters 2
ghi00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 5
sot03083 Polycomb repressive complex 3
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 4
nta00053 Ascorbate and aldarate metabolism 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00620 Pyruvate metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 5
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839141 100786254 100801664 101258928 4346673 103647359 103835463 103840588 100259509 7483938 7466913 25481943 11433176 123121169 100682446 123452291 107919383 107887167 106361861 106361923 66057138 110432905 102582320 102624904 100843505 107795738 107826460
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