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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   UBP2   ubiquitin-specific protease 2 
 ath-r.7   UBP2   ubiquitin-specific protease 2 
 ath-m.9   UBP2   ubiquitin-specific protease 2 
 ath-e.2   UBP2   ubiquitin-specific protease 2 
 ath-m.4.bio   UBP2   ubiquitin-specific protease 2 
 ath-m.4.hor   UBP2   ubiquitin-specific protease 2 
 ath-m.4.lig   UBP2   ubiquitin-specific protease 2 
 ath-m.4.str   UBP2   ubiquitin-specific protease 2 
 ath-m.4.tis   UBP2   ubiquitin-specific protease 2 
 gma-u.5   100780952   ubiquitin carboxyl-terminal hydrolase 2 
 gma-u.5   100776156   ubiquitin carboxyl-terminal hydrolase 2 
 vvi-u.5   100255551   ubiquitin carboxyl-terminal hydrolase 2 
 ppo-u.5   7461662   ubiquitin carboxyl-terminal hydrolase 2 
 ppo-u.5   7496628   ubiquitin carboxyl-terminal hydrolase 2 
 mtr-u.5   11435669   ubiquitin carboxyl-terminal hydrolase 2 
 sly-u.5   101264762   ubiquitin carboxyl-terminal hydrolase 2 
 sly-u.5   101245656   ubiquitin carboxyl-terminal hydrolase 2-like 
 osa-u.5   4347503   ubiquitin carboxyl-terminal hydrolase 2 
 zma-u.5   103647570   ubiquitin carboxyl-terminal hydrolase 2 

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Top 50 coexpressed genes to UBP2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to UBP2 (ath-u.5 coexpression data)

CoexMap"839397"


athUBP2 | Entrez gene ID : 839397      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 2 1 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03083 [list] [network] Polycomb repressive complex (65 genes)
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (219 genes)  TAS  
GO CC
GO:0000502 [list] [network] proteasome complex  (53 genes)  TAS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004843 [list] [network] cysteine-type deubiquitinase activity  (39 genes)  IMP  
Protein NP_563719.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cysk 1,  golg_plas 1  (predict for NP_563719.1)
Subcellular
localization
TargetP
other 8  (predict for NP_563719.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
UBP2

.
ath-r.7
for
UBP2

.
ath-m.9
for
UBP2

.
ath-e.2
for
UBP2

.
ath-m.4.bio
for
UBP2

.
ath-m.4.hor
for
UBP2

.
ath-m.4.lig
for
UBP2

.
ath-m.4.str
for
UBP2

.
ath-m.4.tis
for
UBP2

.
gma-u.5
for
100780952

.
gma-u.5
for
100776156

.
vvi-u.5
for
100255551

.
ppo-u.5
for
7461662

.
ppo-u.5
for
7496628

.
mtr-u.5
for
11435669

.
sly-u.5
for
101264762

.
sly-u.5
for
101245656

.
osa-u.5
for
4347503

.
zma-u.5
for
103647570

.


Ortholog ID: 6232
Species ath gma gma sly sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna sbi sot sot cit bdi bdi nta nta
Symbol UBP2 LOC100780952 LOC100776156 LOC101264762 LOC101245656 LOC4347503 LOC103647570 LOC103843633 LOC103836550 LOC100255551 LOC7461662 LOC7496628 LOC11435669 LOC123104292 LOC123112547 LOC123399743 LOC107908467 LOC107887234 LOC106430223 LOC8054776 LOC102604177 LOC102584496 LOC102615386 LOC100839956 LOC100834637 LOC107824150 LOC107783494
Function* ubiquitin-specific protease 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2-like ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 1 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2-like ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2-like ubiquitin carboxyl-terminal hydrolase 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 3
ppo04144 Endocytosis 3
ppo05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 5
ppo01200 Carbon metabolism 4
ppo00010 Glycolysis / Gluconeogenesis 3
ppo00020 Citrate cycle (TCA cycle) 3
ppo00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 3
ghi03083 Polycomb repressive complex 2
ghi04148 Efferocytosis 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 3
ghi03083 Polycomb repressive complex 2
ghi04148 Efferocytosis 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 3
bna03082 ATP-dependent chromatin remodeling 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 4
nta04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 4
nta04141 Protein processing in endoplasmic reticulum 4
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
nta00770 Pantothenate and CoA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839397 100780952 100776156 101264762 101245656 4347503 103647570 103843633 103836550 100255551 7461662 7496628 11435669 123104292 123112547 123399743 107908467 107887234 106430223 8054776 102604177 102584496 102615386 100839956 100834637 107824150 107783494
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