ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT1G27385	phosphoribosylformylglycinamidine synthase
ath-r.7	AT1G27385	phosphoribosylformylglycinamidine synthase
ath-m.9	AT1G27385	phosphoribosylformylglycinamidine synthase
ath-e.2	AT1G27385	phosphoribosylformylglycinamidine synthase
ath-m.4.bio	AT1G27385	phosphoribosylformylglycinamidine synthase
ath-m.4.hor	AT1G27385	phosphoribosylformylglycinamidine synthase
ath-m.4.lig	AT1G27385	phosphoribosylformylglycinamidine synthase
ath-m.4.str	AT1G27385	phosphoribosylformylglycinamidine synthase
ath-m.4.tis	AT1G27385	phosphoribosylformylglycinamidine synthase
bra-r.6	103829066	uncharacterized LOC103829066
bra-r.6	103839041	uncharacterized LOC103839041
bna-r.1	BNAC07G11420D	uncharacterized BNAC07G11420D
bna-r.1	106358020	uncharacterized LOC106358020
bna-r.1	BNAA09G27930D	uncharacterized BNAA09G27930D
ghi-r.1	107933356	uncharacterized LOC107933356
ghi-r.1	107921030	uncharacterized LOC107921030
ghi-r.1	107916898	uncharacterized LOC107916898
cit-r.1	102609312	uncharacterized LOC102609312
gma-u.5	100819554	uncharacterized LOC100819554
gma-u.5	100499928	uncharacterized LOC100499928
gma-u.5	100795278	uncharacterized LOC100795278
vvi-u.5	100248862	uncharacterized LOC100248862
ppo-u.5	7496573	uncharacterized LOC7496573
ppo-u.5	112326035	uncharacterized LOC112326035
mtr-u.5	11438520	uncharacterized LOC11438520
sly-u.5	101265915	uncharacterized LOC101265915
sot-r.1	102605584	uncharacterized LOC102605584
nta-r.1	107825734	uncharacterized LOC107825734
nta-r.1	107781981	uncharacterized LOC107781981
nta-r.1	107822494	uncharacterized LOC107822494
osa-u.5	4329441	uncharacterized LOC4329441
osa-u.5	4335654	uncharacterized LOC4335654
zma-u.5	100191815	uncharacterized LOC100191815
zma-u.5	100192614	uncharacterized LOC100192614
tae-r.2	123189050	uncharacterized LOC123189050
tae-r.2	123053139	uncharacterized LOC123053139
tae-r.2	123045301	uncharacterized LOC123045301
hvu-r.1	123426533	uncharacterized LOC123426533
sbi-r.1	8070820	uncharacterized LOC8070820
sbi-r.1	8056081	uncharacterized LOC8056081
bdi-r.1	100835681	uncharacterized LOC100835681
cre-r.1	CHLRE_02g074700v5	uncharacterized protein
cre-r.1	CHLRE_12g508300v5	uncharacterized protein

Top 50 coexpressed genes to AT1G27385 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G27385 (ath-u.5 coexpression data)

CoexMap"839628"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

NP_001077606.1 [sequence] [blastp]
NP_001154373.1 [sequence] [blastp]
NP_001154374.1 [sequence] [blastp]
NP_564282.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, nucl 1	(predict for NP_001077606.1)
chlo 9	(predict for NP_001154373.1)
chlo 8, mito 1	(predict for NP_001154374.1)
chlo 9, nucl 1	(predict for NP_564282.1)

Subcellular
localization
TargetP

chlo 7, mito 4	(predict for NP_001077606.1)
chlo 7, mito 4	(predict for NP_001154373.1)
chlo 7, mito 4	(predict for NP_001154374.1)
chlo 7, mito 4	(predict for NP_564282.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT1G27385	ath-r.7 for AT1G27385	ath-m.9 for AT1G27385	ath-e.2 for AT1G27385	ath-m.4.bio for AT1G27385	ath-m.4.hor for AT1G27385	ath-m.4.lig for AT1G27385	ath-m.4.str for AT1G27385	ath-m.4.tis for AT1G27385	bra-r.6 for 103829066	bra-r.6 for 103839041	bna-r.1 for BNAC07G11420D	bna-r.1 for 106358020	bna-r.1 for BNAA09G27930D	ghi-r.1 for 107933356	ghi-r.1 for 107921030	ghi-r.1 for 107916898	cit-r.1 for 102609312	gma-u.5 for 100819554	gma-u.5 for 100499928	gma-u.5 for 100795278	vvi-u.5 for 100248862	ppo-u.5 for 7496573	ppo-u.5 for 112326035	mtr-u.5 for 11438520	sly-u.5 for 101265915	sot-r.1 for 102605584	nta-r.1 for 107825734	nta-r.1 for 107781981	nta-r.1 for 107822494	osa-u.5 for 4329441	osa-u.5 for 4335654	zma-u.5 for 100191815	zma-u.5 for 100192614	tae-r.2 for 123189050	tae-r.2 for 123053139	tae-r.2 for 123045301	hvu-r.1 for 123426533	sbi-r.1 for 8070820	sbi-r.1 for 8056081	bdi-r.1 for 100835681	cre-r.1 for CHLRE_02g074700v5	cre-r.1 for CHLRE_12g508300v5

Ortholog

Ortholog ID: 5418

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

phosphoribosylformylglycinamidine synthase

uncharacterized LOC103829066

uncharacterized LOC103839041

uncharacterized LOC106358020

uncharacterized BNAA09G27930D

uncharacterized LOC106401273

uncharacterized LOC107933356

uncharacterized LOC107921030

uncharacterized LOC107916898

uncharacterized LOC102609312

uncharacterized LOC100819554

uncharacterized LOC100499928

uncharacterized LOC100795278

uncharacterized LOC100248862

uncharacterized LOC7496573

uncharacterized LOC112326035

uncharacterized LOC11438520

uncharacterized LOC101265915

uncharacterized LOC102605584

uncharacterized LOC107825734

uncharacterized LOC107781981

uncharacterized LOC107822494

uncharacterized LOC4329441

uncharacterized LOC4335654

uncharacterized LOC100191815

uncharacterized LOC100192614

uncharacterized LOC123189050

uncharacterized LOC123053139

uncharacterized LOC123045301

uncharacterized LOC123426533

uncharacterized LOC8070820

uncharacterized LOC8056081

uncharacterized LOC100835681

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00010	Glycolysis / Gluconeogenesis	2
bra00030	Pentose phosphate pathway	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00480	Glutathione metabolism	2
bna00906	Carotenoid biosynthesis	2
bna03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00480	Glutathione metabolism	2
bna00906	Carotenoid biosynthesis	2
bna03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00740	Riboflavin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00740	Riboflavin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	4
gma00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00860	Porphyrin metabolism	3
gma03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00860	Porphyrin metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00220	Arginine biosynthesis	2
mtr00250	Alanine, aspartate and glutamate metabolism	2
mtr00630	Glyoxylate and dicarboxylate metabolism	2
mtr00910	Nitrogen metabolism	2
mtr01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	5
sot00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03060	Protein export	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00260	Glycine, serine and threonine metabolism	4
cre01230	Biosynthesis of amino acids	4
cre00270	Cysteine and methionine metabolism	2
cre01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	9
cre00970	Aminoacyl-tRNA biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

839628

103829066

103839041

106358020

106367324

106401273

107933356

107921030

107916898

102609312

100819554

100499928

100795278

100248862

7496573

112326035

11438520

101265915

102605584

107825734

107781981

107822494

4329441

4335654

100191815

100192614

123189050

123053139

123045301

123426533

8070820

8056081

100835681

5727184

5716518

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	2	3	3	1	3	1	2	1	1	1	3	2	2	3	1	2	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G27385 (ath-u.5 coexpression data)

Top 50 enrichment test to AT1G27385 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**