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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G28530   deneddylase 
 ath-r.7   AT1G28530   deneddylase 
 ath-m.9   AT1G28530   deneddylase 
 ath-e.2   AT1G28530   deneddylase 
 ath-m.4.bio   AT1G28530   deneddylase 
 ath-m.4.hor   AT1G28530   deneddylase 
 ath-m.4.lig   AT1G28530   deneddylase 
 ath-m.4.str   AT1G28530   deneddylase 
 ath-m.4.tis   AT1G28530   deneddylase 
 bra-r.6   103835314   uncharacterized LOC103835314 
 bna-r.1   106361675   uncharacterized LOC106361675 
 bna-r.1   106389634   uncharacterized LOC106389634 
 ghi-r.1   107963350   uncharacterized LOC107963350 
 ghi-r.1   107941192   uncharacterized LOC107941192 
 cit-r.1   102627895   uncharacterized LOC102627895 
 gma-u.5   100785118   uncharacterized LOC100785118 
 gma-u.5   100782020   uncharacterized LOC100782020 
 vvi-u.5   100248663   uncharacterized LOC100248663 
 ppo-u.5   7476365   uncharacterized LOC7476365 
 mtr-u.5   11443315   uncharacterized LOC11443315 
 sly-u.5   101254664   uncharacterized LOC101254664 
 sot-r.1   102593547   uncharacterized LOC102593547 
 nta-r.1   107773584   uncharacterized LOC107773584 
 osa-u.5   4328038   uncharacterized LOC4328038 
 zma-u.5   103626515   uncharacterized LOC103626515 
 tae-r.2   123143076   uncharacterized LOC123143076 
 tae-r.2   123135503   uncharacterized LOC123135503 
 tae-r.2   123131682   uncharacterized LOC123131682 
 hvu-r.1   123404885   uncharacterized LOC123404885 
 sbi-r.1   8066496   uncharacterized LOC8066496 
 sbi-r.1   110434551   uncharacterized LOC110434551 
 bdi-r.1   100830827   uncharacterized LOC100830827 

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Top 50 coexpressed genes to AT1G28530 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G28530 (ath-u.5 coexpression data)

CoexMap"839753"


athAT1G28530 | Entrez gene ID : 839753      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 1 1 1 3 1 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1903866 [list] [network] palisade mesophyll development  (2 genes)  IMP  
GO:0090391 [list] [network] granum assembly  (6 genes)  IMP  
GO:0010027 [list] [network] thylakoid membrane organization  (49 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
Protein NP_174175.2 [sequence] [blastp]
NP_973929.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1  (predict for NP_174175.2)
chlo 8,  mito 1  (predict for NP_973929.2)
Subcellular
localization
TargetP
chlo 9  (predict for NP_174175.2)
chlo 9  (predict for NP_973929.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G28530
ath-r.7
for
AT1G28530
ath-m.9
for
AT1G28530
ath-e.2
for
AT1G28530
ath-m.4.bio
for
AT1G28530
ath-m.4.hor
for
AT1G28530
ath-m.4.lig
for
AT1G28530
ath-m.4.str
for
AT1G28530
ath-m.4.tis
for
AT1G28530
bra-r.6
for
103835314
bna-r.1
for
106361675
bna-r.1
for
106389634
ghi-r.1
for
107963350
ghi-r.1
for
107941192
cit-r.1
for
102627895
gma-u.5
for
100785118
gma-u.5
for
100782020
vvi-u.5
for
100248663
ppo-u.5
for
7476365
mtr-u.5
for
11443315
sly-u.5
for
101254664
sot-r.1
for
102593547
nta-r.1
for
107773584
osa-u.5
for
4328038
zma-u.5
for
103626515
tae-r.2
for
123143076
tae-r.2
for
123135503
tae-r.2
for
123131682
hvu-r.1
for
123404885
sbi-r.1
for
8066496
sbi-r.1
for
110434551
bdi-r.1
for
100830827


Ortholog ID: 11072
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta osa zma tae tae tae hvu sbi sbi bdi
Symbol AT1G28530 LOC103835314 LOC106361675 LOC106389634 LOC107963350 LOC107941192 LOC102627895 LOC100785118 LOC100782020 LOC100248663 LOC7476365 LOC11443315 LOC101254664 LOC102593547 LOC107773584 LOC4328038 LOC103626515 LOC123143076 LOC123135503 LOC123131682 LOC123404885 LOC8066496 LOC110434551 LOC100830827
Function* deneddylase uncharacterized LOC103835314 uncharacterized LOC106361675 uncharacterized LOC106389634 uncharacterized LOC107963350 uncharacterized LOC107941192 uncharacterized LOC102627895 uncharacterized LOC100785118 uncharacterized LOC100782020 uncharacterized LOC100248663 uncharacterized LOC7476365 uncharacterized LOC11443315 uncharacterized LOC101254664 uncharacterized LOC102593547 uncharacterized LOC107773584 uncharacterized LOC4328038 uncharacterized LOC103626515 uncharacterized LOC123143076 uncharacterized LOC123135503 uncharacterized LOC123131682 uncharacterized LOC123404885 uncharacterized LOC8066496 uncharacterized LOC110434551 uncharacterized LOC100830827
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00240 Pyrimidine metabolism 2
ath01232 Nucleotide metabolism 2
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00053 Ascorbate and aldarate metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00053 Ascorbate and aldarate metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
ghi03020 RNA polymerase 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
ghi03020 RNA polymerase 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 2
gma00970 Aminoacyl-tRNA biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
vvi03013 Nucleocytoplasmic transport 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01232 Nucleotide metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839753 103835314 106361675 106389634 107963350 107941192 102627895 100785118 100782020 100248663 7476365 11443315 101254664 102593547 107773584 4328038 103626515 123143076 123135503 123131682 123404885 8066496 110434551 100830827
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