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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SRD2   snRNA activating complex family protein 
 ath-r.7   SRD2   snRNA activating complex family protein 
 ath-m.9   SRD2   snRNA activating complex family protein 
 ath-e.2   SRD2   snRNA activating complex family protein 
 ath-m.4.bio   SRD2   snRNA activating complex family protein 
 ath-m.4.hor   SRD2   snRNA activating complex family protein 
 ath-m.4.lig   SRD2   snRNA activating complex family protein 
 ath-m.4.str   SRD2   snRNA activating complex family protein 
 ath-m.4.tis   SRD2   snRNA activating complex family protein 
 gma-u.5   100802470   snRNA-activating protein complex subunit 
 vvi-u.5   100854109   snRNA-activating protein complex subunit 
 ppo-u.5   7474040   snRNA-activating protein complex subunit 
 mtr-u.5   25494348   snRNA-activating protein complex subunit 
 mtr-u.5   25483006   snRNA-activating protein complex subunit 
 mtr-u.5   25501133   snRNA-activating protein complex subunit 
 sly-u.5   101248718   snRNA-activating protein complex subunit 
 osa-u.5   4324317   snRNA-activating protein complex subunit 
 zma-u.5   100275588   uncharacterized LOC100275588 

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Top 50 coexpressed genes to SRD2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SRD2 (ath-u.5 coexpression data)

CoexMap"839756"


athSRD2 | Entrez gene ID : 839756      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 1 1 1 3 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009301 [list] [network] snRNA transcription  (1 genes)  IMP  
GO:0060184 [list] [network] cell cycle switching  (1 genes)  IMP  
GO:0043697 [list] [network] cell dedifferentiation  (2 genes)  IMP  
GO:0009945 [list] [network] radial axis specification  (3 genes)  IMP  
GO:0009942 [list] [network] longitudinal axis specification  (9 genes)  IMP  
GO:0010014 [list] [network] meristem initiation  (36 genes)  IMP  
GO:0010311 [list] [network] lateral root formation  (61 genes)  IMP  
GO:0009926 [list] [network] auxin polar transport  (72 genes)  IMP  
GO:0071368 [list] [network] cellular response to cytokinin stimulus  (72 genes)  IEP  
GO:0071365 [list] [network] cellular response to auxin stimulus  (93 genes)  IEP  
GO:1905392 [list] [network] plant organ morphogenesis  (480 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
Protein NP_001117373.2 [sequence] [blastp]
NP_001321583.1 [sequence] [blastp]
NP_174178.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001117373.2)
nucl 9  (predict for NP_001321583.1)
nucl 8,  cyto 1  (predict for NP_174178.2)
Subcellular
localization
TargetP
other 7  (predict for NP_001117373.2)
other 8  (predict for NP_001321583.1)
other 7  (predict for NP_174178.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SRD2

.
ath-r.7
for
SRD2

.
ath-m.9
for
SRD2

.
ath-e.2
for
SRD2

.
ath-m.4.bio
for
SRD2

.
ath-m.4.hor
for
SRD2

.
ath-m.4.lig
for
SRD2

.
ath-m.4.str
for
SRD2

.
ath-m.4.tis
for
SRD2

.
gma-u.5
for
100802470

.
vvi-u.5
for
100854109

.
ppo-u.5
for
7474040

.
mtr-u.5
for
25494348

.
mtr-u.5
for
25483006

.
mtr-u.5
for
25501133

.
sly-u.5
for
101248718

.
osa-u.5
for
4324317

.
zma-u.5
for
100275588

.


Ortholog ID: 9813
Species ath gma sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol SRD2 LOC100802470 LOC101248718 LOC4324317 LOC100275588 LOC103835310 LOC100854109 LOC7474040 LOC25494348 LOC25501133 LOC123080229 LOC123071913 LOC123445175 LOC107903963 LOC107956983 LOC106361672 LOC106389633 CHLRE_15g636650v5 LOC8078716 LOC102584468 LOC102627990 LOC100840721 LOC107785074 LOC107814064
Function* snRNA activating complex family protein snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit uncharacterized LOC100275588 snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit-like snRNA-activating protein complex subunit uncharacterized protein snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit-like snRNA-activating protein complex subunit-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00790 Folate biosynthesis 2
mtr01240 Biosynthesis of cofactors 2
mtr04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00790 Folate biosynthesis 2
mtr01240 Biosynthesis of cofactors 2
mtr04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
bna04120 Ubiquitin mediated proteolysis 2
bna00410 beta-Alanine metabolism 2
bna00640 Propanoate metabolism 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04122 Sulfur relay system 2
sot00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839756 100802470 101248718 4324317 100275588 103835310 100854109 7474040 25494348 25501133 123080229 123071913 123445175 107903963 107956983 106361672 106389633 5726184 8078716 102584468 102627990 100840721 107785074 107814064
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