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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   ARF6   auxin response factor 6 
 ath-r.7   ARF6   auxin response factor 6 
 ath-m.9   ARF6   auxin response factor 6 
 ath-e.2   ARF6   auxin response factor 6 
 ath-m.4.bio   ARF6   auxin response factor 6 
 ath-m.4.hor   ARF6   auxin response factor 6 
 ath-m.4.lig   ARF6   auxin response factor 6 
 ath-m.4.str   ARF6   auxin response factor 6 
 ath-m.4.tis   ARF6   auxin response factor 6 
 bra-r.6   103835219   auxin response factor 6 
 bra-r.6   103840407   auxin response factor 6 
 bna-r.1   106367280   auxin response factor 6 
 bna-r.1   106361581   auxin response factor 6 
 bna-r.1   106418427   auxin response factor 6 
 ghi-r.1   107939032   auxin response factor 6 
 ghi-r.1   107958298   auxin response factor 6 
 ghi-r.1   107945439   auxin response factor 6 
 cit-r.1   102619942   auxin response factor 6-like 
 cit-r.1   102620318   auxin response factor 6 
 gma-u.5   100796447   auxin response factor 6 
 gma-u.5   100810798   auxin response factor 6 
 gma-u.5   100809105   auxin response factor 6 
 vvi-u.5   100260866   auxin response factor 6 
 vvi-u.5   100242923   auxin response factor 6 
 ppo-u.5   7464667   auxin response factor 6 
 ppo-u.5   7471871   auxin response factor 6 
 ppo-u.5   7487515   auxin response factor 6 
 mtr-u.5   25501691   auxin response factor 6 
 mtr-u.5   11446854   auxin response factor 6 
 sly-u.5   ARF6A   auxin response factor 6a 
 sly-u.5   ARF6A   auxin response factor 6a 
 sot-r.1   102598519   auxin response factor 6-like 
 sot-r.1   102606235   auxin response factor 6-like 
 nta-r.1   107761773   auxin response factor 6 
 nta-r.1   107762058   auxin response factor 6 
 nta-r.1   107774783   auxin response factor 6 
 osa-u.5   4328406   auxin response factor 6-like 
 osa-u.5   4341841   auxin response factor 17-like 
 osa-u.5   4352783   auxin response factor 25-like 
 zma-u.5   103640601   auxin response factor 25 
 zma-u.5   103629639   auxin response factor 17 
 zma-u.5   103654892   uncharacterized LOC103654892 
 tae-r.2   123102161   auxin response factor 25 
 tae-r.2   123136458   auxin response factor 6 
 tae-r.2   123110307   auxin response factor 25 
 hvu-r.1   123401291   auxin response factor 6-like 
 hvu-r.1   123399485   auxin response factor 25-like 
 hvu-r.1   123412954   auxin response factor 17 
 sbi-r.1   8070167   auxin response factor 25 
 sbi-r.1   8061613   auxin response factor 17 
 bdi-r.1   100837546   auxin response factor 17 
 bdi-r.1   100841896   auxin response factor 25 
 bdi-r.1   100829021   auxin response factor 6 

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Top 50 coexpressed genes to ARF6 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ARF6 (ath-u.5 coexpression data)

CoexMap"839913"


athARF6 | Entrez gene ID : 839913      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 2 3 2 3 2 2 2 3 3 3 3 3 2 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04075 [list] [network] Plant hormone signal transduction (433 genes)
GO BP
GO:0009733 [list] [network] response to auxin  (344 genes)  IMP  
GO:0009908 [list] [network] flower development  (378 genes)  IGI  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001031115.1 [sequence] [blastp]
NP_001320924.1 [sequence] [blastp]
NP_174323.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001031115.1)
nucl 9  (predict for NP_001320924.1)
nucl 9  (predict for NP_174323.1)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for NP_001031115.1)
other 5,  chlo 3  (predict for NP_001320924.1)
other 4,  chlo 4  (predict for NP_174323.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
ARF6
ath-r.7
for
ARF6
ath-m.9
for
ARF6
ath-e.2
for
ARF6
ath-m.4.bio
for
ARF6
ath-m.4.hor
for
ARF6
ath-m.4.lig
for
ARF6
ath-m.4.str
for
ARF6
ath-m.4.tis
for
ARF6
bra-r.6
for
103835219
bra-r.6
for
103840407
bna-r.1
for
106367280
bna-r.1
for
106361581
bna-r.1
for
106418427
ghi-r.1
for
107939032
ghi-r.1
for
107958298
ghi-r.1
for
107945439
cit-r.1
for
102619942
cit-r.1
for
102620318
gma-u.5
for
100796447
gma-u.5
for
100810798
gma-u.5
for
100809105
vvi-u.5
for
100260866
vvi-u.5
for
100242923
ppo-u.5
for
7464667
ppo-u.5
for
7471871
ppo-u.5
for
7487515
mtr-u.5
for
25501691
mtr-u.5
for
11446854
sly-u.5
for
ARF6A
sly-u.5
for
ARF6A
sot-r.1
for
102598519
sot-r.1
for
102606235
nta-r.1
for
107761773
nta-r.1
for
107762058
nta-r.1
for
107774783
osa-u.5
for
4328406
osa-u.5
for
4341841
osa-u.5
for
4352783
zma-u.5
for
103640601
zma-u.5
for
103629639
zma-u.5
for
103654892
tae-r.2
for
123102161
tae-r.2
for
123136458
tae-r.2
for
123110307
hvu-r.1
for
123401291
hvu-r.1
for
123399485
hvu-r.1
for
123412954
sbi-r.1
for
8070167
sbi-r.1
for
8061613
bdi-r.1
for
100837546
bdi-r.1
for
100841896
bdi-r.1
for
100829021


Ortholog ID: 2251
Species ath bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi bdi bdi bdi
Symbol ARF6 LOC103835219 LOC103840407 LOC106367280 LOC106361581 LOC106410709 LOC107958298 LOC107916462 LOC107888470 LOC102619942 LOC102620318 LOC100796447 LOC100810798 LOC100806203 LOC100260866 LOC100242923 LOC7464667 LOC7487515 LOC7480706 LOC25501691 LOC11446854 ARF6A ARF6A LOC102598519 LOC102606235 LOC107761773 LOC107774783 LOC107778611 LOC4328406 LOC4341841 LOC4352783 LOC103640601 LOC103629639 LOC100279854 LOC123143962 LOC123149072 LOC123169054 LOC123401291 LOC123399485 LOC123412954 LOC8070167 LOC8061613 LOC100837546 LOC100841896 LOC100829021
Function* auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6-like auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6 auxin response factor 6a auxin response factor 6a auxin response factor 6-like auxin response factor 6-like auxin response factor 6 auxin response factor 6 auxin response factor 6-like auxin response factor 6-like auxin response factor 17-like auxin response factor 25-like auxin response factor 25 auxin response factor 17 uncharacterized LOC100279854 auxin response factor 6 auxin response factor 17 auxin response factor 17 auxin response factor 6-like auxin response factor 25-like auxin response factor 17 auxin response factor 25 auxin response factor 17 auxin response factor 17 auxin response factor 25 auxin response factor 6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 5
ppo03040 Spliceosome 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 8
nta03008 Ribosome biogenesis in eukaryotes 3
nta03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 8
nta03008 Ribosome biogenesis in eukaryotes 3
nta03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa02010 ABC transporters 2
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 5
tae00500 Starch and sucrose metabolism 3
tae00905 Brassinosteroid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 5
tae00500 Starch and sucrose metabolism 3
tae00905 Brassinosteroid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 4
tae00500 Starch and sucrose metabolism 3
tae00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04142 Lysosome 2
hvu04144 Endocytosis 2
hvu05100 Bacterial invasion of epithelial cells 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839913 103835219 103840407 106367280 106361581 106410709 107958298 107916462 107888470 102619942 102620318 100796447 100810798 100806203 100260866 100242923 7464667 7487515 7480706 25501691 11446854 101259615 100316890 102598519 102606235 107761773 107774783 107778611 4328406 4341841 4352783 103640601 103629639 100279854 123143962 123149072 123169054 123401291 123399485 123412954 8070167 8061613 100837546 100841896 100829021
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