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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT-IE   histidine biosynthesis bifunctional protein (HISIE) 
 ath-r.7   AT-IE   histidine biosynthesis bifunctional protein (HISIE) 
 ath-m.9   AT-IE   histidine biosynthesis bifunctional protein (HISIE) 
 ath-e.2   AT-IE   histidine biosynthesis bifunctional protein (HISIE) 
 ath-m.4.bio   AT-IE   histidine biosynthesis bifunctional protein (HISIE) 
 ath-m.4.hor   AT-IE   histidine biosynthesis bifunctional protein (HISIE) 
 ath-m.4.lig   AT-IE   histidine biosynthesis bifunctional protein (HISIE) 
 ath-m.4.str   AT-IE   histidine biosynthesis bifunctional protein (HISIE) 
 ath-m.4.tis   AT-IE   histidine biosynthesis bifunctional protein (HISIE) 
 bra-r.6   103840211   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 bra-r.6   103868926   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 bna-r.1   125586955   histidine biosynthesis bifunctional protein hisIE, chloroplastic-like 
 bna-r.1   125608753   histidine biosynthesis bifunctional protein hisIE, chloroplastic-like 
 bna-r.1   106451798   histidine biosynthesis bifunctional protein hisIE, chloroplastic-like 
 ghi-r.1   121226409   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 ghi-r.1   107945840   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 ghi-r.1   107922436   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 cit-r.1   102608490   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 gma-u.5   100807276   histidine biosynthesis bifunctional protein hisIE, chloroplastic-like 
 vvi-u.5   100258301   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 ppo-u.5   18095493   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 mtr-u.5   25498966   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 sly-u.5   101244621   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 sot-r.1   107061051   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 nta-r.1   107784152   histidine biosynthesis bifunctional protein hisIE, chloroplastic-like 
 nta-r.1   107760493   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 osa-u.5   4324261   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 zma-u.5   100284200   histidine biosynthesis bifunctional protein hisIE 
 tae-r.2   123061105   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 tae-r.2   123069691   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 tae-r.2   123078177   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 hvu-r.1   123443518   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 sbi-r.1   8074535   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 sbi-r.1   8076670   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 bdi-r.1   100840720   histidine biosynthesis bifunctional protein hisIE, chloroplastic 
 cre-r.1   CHLRE_13g576650v5   uncharacterized protein 

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Top 50 coexpressed genes to AT-IE (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT-IE (ath-u.5 coexpression data)

CoexMap"840076"


athAT-IE | Entrez gene ID : 840076      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 1 1 1 1 1 1 2 1 1 3 1 2 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00340 [list] [network] Histidine metabolism (19 genes)
ath01230 [list] [network] Biosynthesis of amino acids (242 genes)
GO BP
GO:0000105 [list] [network] L-histidine biosynthetic process  (10 genes)  TAS  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0004635 [list] [network] phosphoribosyl-AMP cyclohydrolase activity  (1 genes)  IDA IEA  
GO:0004636 [list] [network] phosphoribosyl-ATP diphosphatase activity  (1 genes)  IDA IEA  
Protein NP_001322576.1 [sequence] [blastp]
NP_001322577.1 [sequence] [blastp]
NP_174469.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  mito 3  (predict for NP_001322576.1)
chlo 7,  vacu 1,  nucl 1,  extr 1,  E.R._vacu 1  (predict for NP_001322577.1)
chlo 9  (predict for NP_174469.1)
Subcellular
localization
TargetP
mito 5,  chlo 3  (predict for NP_001322576.1)
mito 3  (predict for NP_001322577.1)
mito 3  (predict for NP_174469.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT-IE
ath-r.7
for
AT-IE
ath-m.9
for
AT-IE
ath-e.2
for
AT-IE
ath-m.4.bio
for
AT-IE
ath-m.4.hor
for
AT-IE
ath-m.4.lig
for
AT-IE
ath-m.4.str
for
AT-IE
ath-m.4.tis
for
AT-IE
bra-r.6
for
103840211
bra-r.6
for
103868926
bna-r.1
for
125586955
bna-r.1
for
125608753
bna-r.1
for
106451798
ghi-r.1
for
121226409
ghi-r.1
for
107945840
ghi-r.1
for
107922436
cit-r.1
for
102608490
gma-u.5
for
100807276
vvi-u.5
for
100258301
ppo-u.5
for
18095493
mtr-u.5
for
25498966
sly-u.5
for
101244621
sot-r.1
for
107061051
nta-r.1
for
107784152
nta-r.1
for
107760493
osa-u.5
for
4324261
zma-u.5
for
100284200
tae-r.2
for
123061105
tae-r.2
for
123069691
tae-r.2
for
123078177
hvu-r.1
for
123443518
sbi-r.1
for
8074535
sbi-r.1
for
8076670
bdi-r.1
for
100840720
cre-r.1
for
CHLRE_13g576650v5


Ortholog ID: 7440
Species ath bra bra bna bna bna ghi ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi sbi bdi cre
Symbol AT-IE LOC103840211 LOC103868926 LOC125586955 LOC125608753 LOC106451798 LOC107945840 LOC107922436 LOC107888797 LOC102608490 LOC100807276 LOC100258301 LOC18095493 LOC25498966 LOC101244621 LOC107061051 LOC107784152 LOC107760493 LOC4324261 LOC100284200 LOC123061105 LOC123069691 LOC123078177 LOC123443518 LOC8074535 LOC8076670 LOC100840720 CHLRE_13g576650v5
Function* histidine biosynthesis bifunctional protein (HISIE) histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic-like histidine biosynthesis bifunctional protein hisIE, chloroplastic-like histidine biosynthesis bifunctional protein hisIE, chloroplastic-like histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic-like histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic-like histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic histidine biosynthesis bifunctional protein hisIE, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 12
ath01230 Biosynthesis of amino acids 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 18
bra00340 Histidine metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 14
bra03008 Ribosome biogenesis in eukaryotes 3
bra00340 Histidine metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 4
bna01230 Biosynthesis of amino acids 4
bna03008 Ribosome biogenesis in eukaryotes 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00340 Histidine metabolism 3
ghi01230 Biosynthesis of amino acids 3
ghi03410 Base excision repair 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00340 Histidine metabolism 3
ghi01230 Biosynthesis of amino acids 3
ghi03410 Base excision repair 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00340 Histidine metabolism 3
ghi01230 Biosynthesis of amino acids 3
ghi03410 Base excision repair 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03008 Ribosome biogenesis in eukaryotes 2
cit00790 Folate biosynthesis 2
cit01240 Biosynthesis of cofactors 2
cit04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 3
gma00620 Pyruvate metabolism 3
gma01200 Carbon metabolism 3
gma01212 Fatty acid metabolism 3
gma00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 13
sly01210 2-Oxocarboxylic acid metabolism 5
sly00300 Lysine biosynthesis 5
sly00260 Glycine, serine and threonine metabolism 4
sly00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 5
sot00190 Oxidative phosphorylation 4
sot00340 Histidine metabolism 3
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta03040 Spliceosome 3
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 5
osa00290 Valine, leucine and isoleucine biosynthesis 2
osa01210 2-Oxocarboxylic acid metabolism 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 5
zma00250 Alanine, aspartate and glutamate metabolism 3
zma00190 Oxidative phosphorylation 3
zma00340 Histidine metabolism 3
zma00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 4
tae00340 Histidine metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00340 Histidine metabolism 3
tae01230 Biosynthesis of amino acids 3
tae04144 Endocytosis 2
tae04517 IgSF CAM signaling 2
tae05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 4
tae00340 Histidine metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00340 Histidine metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi00340 Histidine metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840076 103840211 103868926 125586955 125608753 106451798 107945840 107922436 107888797 102608490 100807276 100258301 18095493 25498966 101244621 107061051 107784152 107760493 4324261 100284200 123061105 123069691 123078177 123443518 8074535 8076670 100840720 5719247
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