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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   DYW1   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-r.7   DYW1   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-e.2   DYW1   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103833072   pentatricopeptide repeat-containing protein DWY1, chloroplastic 
 bna-r.1   106399749   pentatricopeptide repeat-containing protein DWY1, chloroplastic-like 
 bna-r.1   106397325   pentatricopeptide repeat-containing protein DWY1, chloroplastic 
 osa-u.5   4334236   putative pentatricopeptide repeat-containing protein At5g52630 
 zma-u.5   100278213   uncharacterized LOC100278213 
 hvu-r.1   123452398   pentatricopeptide repeat-containing protein At4g30700 
 sbi-r.1   8086183   putative pentatricopeptide repeat-containing protein At5g52630 
 bdi-r.1   100839646   pentatricopeptide repeat-containing protein At4g14050, mitochondrial 

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Top 50 coexpressed genes to DYW1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to DYW1 (ath-u.5 coexpression data)

CoexMap"841167"


athDYW1 | Entrez gene ID : 841167      
Species ath bra bna osa zma hvu sbi bdi cre vvi ppo mtr nta tae gma cit sly ghi sot
Paralog 3 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1900871 [list] [network] chloroplast mRNA modification  (4 genes)  IMP  
GO:1900865 [list] [network] chloroplast RNA modification  (18 genes)  IMP  
GO:0009451 [list] [network] RNA modification  (230 genes)  IDA  
GO CC
GO:0005576 [list] [network] extracellular region  (3158 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA  
GO:0009536 [list] [network] plastid  (5443 genes)  IDA  
GO MF
GO:0004540 [list] [network] RNA nuclease activity  (125 genes)  IDA  
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_175189.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  extr 1,  cysk 1,  golg 1,  cysk_nucl 1  (predict for NP_175189.2)
Subcellular
localization
TargetP
chlo 4,  scret 3  (predict for NP_175189.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
DYW1
ath-r.7
for
DYW1
ath-e.2
for
DYW1
bra-r.6
for
103833072
bna-r.1
for
106399749
bna-r.1
for
106397325
osa-u.5
for
4334236
zma-u.5
for
100278213
hvu-r.1
for
123452398
sbi-r.1
for
8086183
bdi-r.1
for
100839646


Ortholog ID: 12698
Species ath bra bna bna osa zma hvu sbi bdi
Symbol DYW1 LOC103833072 LOC106399749 LOC106397325 LOC4334236 LOC100278213 LOC123452398 LOC8086183 LOC100839646
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein DWY1, chloroplastic pentatricopeptide repeat-containing protein DWY1, chloroplastic-like pentatricopeptide repeat-containing protein DWY1, chloroplastic putative pentatricopeptide repeat-containing protein At5g52630 uncharacterized LOC100278213 pentatricopeptide repeat-containing protein At4g30700 putative pentatricopeptide repeat-containing protein At5g52630 pentatricopeptide repeat-containing protein At4g14050, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841167 103833072 106399749 106397325 4334236 100278213 123452398 8086183 100839646
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