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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G63490   transcription factor jumonji (jmjC) domain-containing protein 
 ath-r.7   AT1G63490   transcription factor jumonji (jmjC) domain-containing protein 
 ath-m.9   AT1G63490   transcription factor jumonji (jmjC) domain-containing protein 
 ath-e.2   AT1G63490   transcription factor jumonji (jmjC) domain-containing protein 
 ath-m.4.bio   AT1G63490   transcription factor jumonji (jmjC) domain-containing protein 
 ath-m.4.hor   AT1G63490   transcription factor jumonji (jmjC) domain-containing protein 
 ath-m.4.lig   AT1G63490   transcription factor jumonji (jmjC) domain-containing protein 
 ath-m.4.str   AT1G63490   transcription factor jumonji (jmjC) domain-containing protein 
 ath-m.4.tis   AT1G63490   transcription factor jumonji (jmjC) domain-containing protein 
 gma-u.5   100819576   lysine-specific demethylase rbr-2 
 gma-u.5   100789512   lysine-specific demethylase 5A 
 vvi-u.5   100261599   lysine-specific demethylase JMJ17 
 ppo-u.5   18097038   lysine-specific demethylase JMJ17 
 mtr-u.5   11429104   lysine-specific demethylase 5B 
 sly-u.5   101259658   lysine-specific demethylase JMJ17 
 osa-u.5   9271593   lysine-specific demethylase JMJ17 
 zma-u.5   103626493   lysine-specific demethylase 5B 

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Top 50 coexpressed genes to AT1G63490 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G63490 (ath-u.5 coexpression data)

CoexMap"842655"


athAT1G63490 | Entrez gene ID : 842655      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0090333 [list] [network] regulation of stomatal closure  (43 genes)  IMP  
GO:0009738 [list] [network] abscisic acid-activated signaling pathway  (111 genes)  IMP  
GO:0045814 [list] [network] negative regulation of gene expression, epigenetic  (117 genes)  IMP  
GO:0048589 [list] [network] developmental growth  (423 genes)  IMP  
GO:0009414 [list] [network] response to water deprivation  (426 genes)  IEP IMP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP  
GO:0099402 [list] [network] plant organ development  (1167 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  ISS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0032453 [list] [network] histone H3K4 demethylase activity  (5 genes)  IDA IMP  
GO:0031490 [list] [network] chromatin DNA binding  (22 genes)  IDA  
GO:0043565 [list] [network] sequence-specific DNA binding  (875 genes)  IDA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
Protein NP_001319304.1 [sequence] [blastp]
NP_001320899.1 [sequence] [blastp]
NP_001320900.1 [sequence] [blastp]
NP_001320901.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_001319304.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001320899.1)
cyto 6,  chlo 1,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for NP_001320900.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001320901.1)
Subcellular
localization
TargetP
other 5,  scret 4  (predict for NP_001319304.1)
other 6,  mito 4  (predict for NP_001320899.1)
other 7  (predict for NP_001320900.1)
other 6,  mito 4  (predict for NP_001320901.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G63490

.
ath-r.7
for
AT1G63490

.
ath-m.9
for
AT1G63490

.
ath-e.2
for
AT1G63490

.
ath-m.4.bio
for
AT1G63490

.
ath-m.4.hor
for
AT1G63490

.
ath-m.4.lig
for
AT1G63490

.
ath-m.4.str
for
AT1G63490

.
ath-m.4.tis
for
AT1G63490

.
gma-u.5
for
100819576

.
gma-u.5
for
100789512

.
vvi-u.5
for
100261599

.
ppo-u.5
for
18097038

.
mtr-u.5
for
11429104

.
sly-u.5
for
101259658

.
osa-u.5
for
9271593

.
zma-u.5
for
103626493

.


Ortholog ID: 9273
Species ath gma gma sly osa bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G63490 LOC100789512 LOC100819576 LOC101259658 LOC9271593 LOC103838273 LOC100261599 LOC18097038 LOC11429104 LOC123149931 LOC123161019 LOC123413025 LOC107962976 LOC107936696 LOC106390274 LOC106450823 CHLRE_12g514250v5 LOC8066399 LOC102601233 LOC102617380 LOC100829070 LOC107763178 LOC107784173
Function* transcription factor jumonji (jmjC) domain-containing protein lysine-specific demethylase 5A lysine-specific demethylase rbr-2 lysine-specific demethylase JMJ17 lysine-specific demethylase JMJ17 lysine-specific demethylase 5B lysine-specific demethylase JMJ17 lysine-specific demethylase JMJ17 lysine-specific demethylase 5B lysine-specific demethylase 5B lysine-specific demethylase 5B uncharacterized LOC123413025 lysine-specific demethylase 5D lysine-specific demethylase 5D lysine-specific demethylase 5B lysine-specific demethylase 5B uncharacterized protein lysine-specific demethylase 5D lysine-specific demethylase 5B lysine-specific demethylase JMJ17 lysine-specific demethylase 5C lysine-specific demethylase JMJ17-like lysine-specific demethylase JMJ17
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 3
ath03083 Polycomb repressive complex 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03082 ATP-dependent chromatin remodeling 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra04136 Autophagy - other 2
bra04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03015 mRNA surveillance pathway 2
vvi03018 RNA degradation 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 2
mtr04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 5
tae03013 Nucleocytoplasmic transport 3
tae03082 ATP-dependent chromatin remodeling 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae03013 Nucleocytoplasmic transport 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
hvu03083 Polycomb repressive complex 2
hvu03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04145 Phagosome 2
ghi00310 Lysine degradation 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04145 Phagosome 2
ghi00310 Lysine degradation 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 5
bna03083 Polycomb repressive complex 2
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
bna00310 Lysine degradation 4
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit02010 ABC transporters 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
bdi03015 mRNA surveillance pathway 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842655 100789512 100819576 101259658 9271593 103838273 100261599 18097038 11429104 123149931 123161019 123413025 107962976 107936696 106390274 106450823 66055556 8066399 102601233 102617380 100829070 107763178 107784173
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