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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PTAC4   plastid transcriptionally active 4 
 ath-r.7   PTAC4   plastid transcriptionally active 4 
 ath-m.9   PTAC4   plastid transcriptionally active 4 
 ath-e.2   PTAC4   plastid transcriptionally active 4 
 ath-m.4.bio   PTAC4   plastid transcriptionally active 4 
 ath-m.4.hor   PTAC4   plastid transcriptionally active 4 
 ath-m.4.lig   PTAC4   plastid transcriptionally active 4 
 ath-m.4.str   PTAC4   plastid transcriptionally active 4 
 ath-m.4.tis   PTAC4   plastid transcriptionally active 4 
 bra-r.6   103852224   membrane-associated protein VIPP1, chloroplastic 
 bna-r.1   106410417   membrane-associated protein VIPP1, chloroplastic 
 bna-r.1   106406087   membrane-associated protein VIPP1, chloroplastic 
 ghi-r.1   107896802   membrane-associated 30 kDa protein, chloroplastic 
 ghi-r.1   107910265   membrane-associated 30 kDa protein, chloroplastic 
 ghi-r.1   107914625   membrane-associated 30 kDa protein, chloroplastic 
 cit-r.1   102609397   membrane-associated 30 kDa protein, chloroplastic 
 gma-u.5   100781742   membrane-associated 30 kDa protein, chloroplastic-like 
 gma-u.5   100818209   membrane-associated protein VIPP1-like 
 gma-u.5   100794403   membrane-associated protein VIPP1, chloroplastic 
 vvi-u.5   100249595   membrane-associated protein VIPP1, chloroplastic 
 vvi-u.5   100250774   membrane-associated 30 kDa protein, chloroplastic 
 ppo-u.5   18100149   membrane-associated 30 kDa protein, chloroplastic 
 ppo-u.5   7468808   membrane-associated 30 kDa protein, chloroplastic 
 mtr-u.5   11415977   membrane-associated 30 kDa protein, chloroplastic 
 sly-u.5   101257824   membrane-associated protein VIPP1, chloroplastic 
 sot-r.1   102595670   membrane-associated protein VIPP1, chloroplastic 
 nta-r.1   107793675   membrane-associated protein VIPP1, chloroplastic 
 nta-r.1   107759493   membrane-associated protein VIPP1, chloroplastic 
 osa-u.5   VIPP1   probable membrane-associated 30 kDa protein, chloroplastic 
 zma-u.5   100191375   IM30 protein-like protein 
 zma-u.5   100192628   uncharacterized LOC100192628 
 tae-r.2   123187597   probable membrane-associated 30 kDa protein, chloroplastic 
 tae-r.2   123080149   probable membrane-associated 30 kDa protein, chloroplastic 
 tae-r.2   123066100   probable membrane-associated 30 kDa protein, chloroplastic 
 hvu-r.1   123424825   probable membrane-associated 30 kDa protein, chloroplastic 
 hvu-r.1   123445134   probable membrane-associated 30 kDa protein, chloroplastic 
 sbi-r.1   8056104   probable membrane-associated 30 kDa protein, chloroplastic 
 bdi-r.1   100846897   probable membrane-associated 30 kDa protein, chloroplastic 
 bdi-r.1   100839792   probable membrane-associated 30 kDa protein, chloroplastic 
 cre-r.1   CHLRE_13g583550v5   uncharacterized protein 

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Top 50 coexpressed genes to PTAC4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PTAC4 (ath-u.5 coexpression data)

CoexMap"842833"


athPTAC4 | Entrez gene ID : 842833      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 3 2 2 1 1 1 2 1 2 3 2 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016050 [list] [network] vesicle organization  (27 genes)  IMP  
GO:0010027 [list] [network] thylakoid membrane organization  (49 genes)  IMP  
GO CC
GO:0042644 [list] [network] chloroplast nucleoid  (48 genes)  HDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001322349.1 [sequence] [blastp]
NP_564846.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  mito 3  (predict for NP_001322349.1)
chlo 9  (predict for NP_564846.1)
Subcellular
localization
TargetP
other 4,  scret 4  (predict for NP_001322349.1)
chlo 9  (predict for NP_564846.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PTAC4
ath-r.7
for
PTAC4
ath-m.9
for
PTAC4
ath-e.2
for
PTAC4
ath-m.4.bio
for
PTAC4
ath-m.4.hor
for
PTAC4
ath-m.4.lig
for
PTAC4
ath-m.4.str
for
PTAC4
ath-m.4.tis
for
PTAC4
bra-r.6
for
103852224
bna-r.1
for
106410417
bna-r.1
for
106406087
ghi-r.1
for
107896802
ghi-r.1
for
107910265
ghi-r.1
for
107914625
cit-r.1
for
102609397
gma-u.5
for
100781742
gma-u.5
for
100818209
gma-u.5
for
100794403
vvi-u.5
for
100249595
vvi-u.5
for
100250774
ppo-u.5
for
18100149
ppo-u.5
for
7468808
mtr-u.5
for
11415977
sly-u.5
for
101257824
sot-r.1
for
102595670
nta-r.1
for
107793675
nta-r.1
for
107759493
osa-u.5
for
VIPP1
zma-u.5
for
100191375
zma-u.5
for
100192628
tae-r.2
for
123187597
tae-r.2
for
123080149
tae-r.2
for
123066100
hvu-r.1
for
123424825
hvu-r.1
for
123445134
sbi-r.1
for
8056104
bdi-r.1
for
100846897
bdi-r.1
for
100839792
cre-r.1
for
CHLRE_13g583550v5


Ortholog ID: 5910
Species ath bra bna bna ghi ghi ghi cit gma gma gma vvi vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae tae hvu hvu sbi bdi bdi cre
Symbol PTAC4 LOC103852224 LOC106410417 LOC106406087 LOC107910265 LOC107914625 LOC107951361 LOC102609397 LOC100781742 LOC100818209 LOC100794403 LOC100249595 LOC100250774 LOC18100149 LOC7468808 LOC11415977 LOC101257824 LOC102595670 LOC107793675 LOC107759493 VIPP1 LOC100191375 LOC100192628 LOC123187597 LOC123062956 LOC123051677 LOC123424825 LOC123445134 LOC8056104 LOC100846897 LOC100839792 CHLRE_13g583550v5
Function* plastid transcriptionally active 4 membrane-associated protein VIPP1, chloroplastic membrane-associated protein VIPP1, chloroplastic membrane-associated protein VIPP1, chloroplastic membrane-associated 30 kDa protein, chloroplastic membrane-associated 30 kDa protein, chloroplastic membrane-associated 30 kDa protein, chloroplastic membrane-associated 30 kDa protein, chloroplastic membrane-associated 30 kDa protein, chloroplastic-like membrane-associated protein VIPP1-like membrane-associated protein VIPP1, chloroplastic membrane-associated protein VIPP1, chloroplastic membrane-associated 30 kDa protein, chloroplastic membrane-associated 30 kDa protein, chloroplastic membrane-associated 30 kDa protein, chloroplastic membrane-associated 30 kDa protein, chloroplastic membrane-associated protein VIPP1, chloroplastic membrane-associated protein VIPP1, chloroplastic membrane-associated protein VIPP1, chloroplastic membrane-associated protein VIPP1, chloroplastic probable membrane-associated 30 kDa protein, chloroplastic IM30 protein-like protein uncharacterized LOC100192628 probable membrane-associated 30 kDa protein, chloroplastic probable membrane-associated 30 kDa protein, chloroplastic probable membrane-associated 30 kDa protein, chloroplastic probable membrane-associated 30 kDa protein, chloroplastic probable membrane-associated 30 kDa protein, chloroplastic probable membrane-associated 30 kDa protein, chloroplastic probable membrane-associated 30 kDa protein, chloroplastic probable membrane-associated 30 kDa protein, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04620 Toll-like receptor signaling pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04620 Toll-like receptor signaling pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 4
sot03060 Protein export 2
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00630 Glyoxylate and dicarboxylate metabolism 4
osa01200 Carbon metabolism 4
osa04146 Peroxisome 2
osa00260 Glycine, serine and threonine metabolism 2
osa00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00561 Glycerolipid metabolism 3
tae00564 Glycerophospholipid metabolism 3
tae04144 Endocytosis 3
tae04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 3
cre00290 Valine, leucine and isoleucine biosynthesis 2
cre00966 Glucosinolate biosynthesis 2
cre01210 2-Oxocarboxylic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842833 103852224 106410417 106406087 107910265 107914625 107951361 102609397 100781742 100818209 100794403 100249595 100250774 18100149 7468808 11415977 101257824 102595670 107793675 107759493 4324967 100191375 100192628 123187597 123062956 123051677 123424825 123445134 8056104 100846897 100839792 5719360
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