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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SPDS2   spermidine synthase 2 
 ath-r.7   SPDS2   spermidine synthase 2 
 ath-m.9   SPDS2   spermidine synthase 2 
 ath-e.2   SPDS2   spermidine synthase 2 
 ath-m.4.bio   SPDS2   spermidine synthase 2 
 ath-m.4.hor   SPDS2   spermidine synthase 2 
 ath-m.4.lig   SPDS2   spermidine synthase 2 
 ath-m.4.str   SPDS2   spermidine synthase 2 
 ath-m.4.tis   SPDS2   spermidine synthase 2 
 ath-u.5   SPDS1   spermidine synthase 
 gma-u.5   100790506   spermidine synthase 1-like 
 gma-u.5   100812978   spermidine synthase 1 
 gma-u.5   100792107   spermidine synthase 1-like 
 vvi-u.5   100257112   spermidine synthase-like 
 ppo-u.5   7471485   spermidine synthase 1 
 ppo-u.5   7459055   spermidine synthase 1 
 mtr-u.5   25501297   spermidine synthase 2 
 mtr-u.5   11405952   spermidine synthase 1 
 sly-u.5   101263807   spermidine synthase 1 
 sly-u.5   SPDSY   spermidine synthase 
 osa-u.5   4342996   spermidine synthase 1-like 
 zma-u.5   100282908   uncharacterized LOC100282908 
 zma-u.5   100272866   Spermidine synthase 2 

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Top 50 coexpressed genes to SPDS2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SPDS2 (ath-u.5 coexpression data)

CoexMap"843367"


athSPDS2 | Entrez gene ID : 843367      
Species ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 10 3 1 2 2 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00270 [list] [network] Cysteine and methionine metabolism (125 genes)
ath00330 [list] [network] Arginine and proline metabolism (54 genes)
ath00480 [list] [network] Glutathione metabolism (102 genes)
GO BP
GO:0008295 [list] [network] spermidine biosynthetic process  (5 genes)  IDA  
GO CC
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004766 [list] [network] spermidine synthase activity  (3 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_177188.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cysk 1  (predict for NP_177188.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for NP_177188.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SPDS2

.
ath-r.7
for
SPDS2

.
ath-m.9
for
SPDS2

.
ath-e.2
for
SPDS2

.
ath-m.4.bio
for
SPDS2

.
ath-m.4.hor
for
SPDS2

.
ath-m.4.lig
for
SPDS2

.
ath-m.4.str
for
SPDS2

.
ath-m.4.tis
for
SPDS2

.
ath-u.5
for
SPDS1

.
gma-u.5
for
100790506

.
gma-u.5
for
100812978

.
gma-u.5
for
100792107

.
vvi-u.5
for
100257112

.
ppo-u.5
for
7471485

.
ppo-u.5
for
7459055

.
mtr-u.5
for
25501297

.
mtr-u.5
for
11405952

.
sly-u.5
for
101263807

.
sly-u.5
for
SPDSY

.
osa-u.5
for
4342996

.
zma-u.5
for
100282908

.
zma-u.5
for
100272866

.


Ortholog ID: 3168
Species ath ath gma gma sly sly osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol SPDS1 SPDS2 LOC100792107 LOC100776863 SPDSY LOC101263807 LOC4342996 LOC100282908 LOC100272866 LOC103829257 LOC103840733 LOC100257112 LOC7471485 LOC7459055 LOC25501297 LOC11405952 LOC123165222 LOC123157056 LOC123411768 LOC107909636 LOC107886614 LOC106403388 LOC106358109 CHLRE_12g558450v5 LOC110432894 LOC102587738 LOC102586756 LOC102607262 LOC100846264 LOC107765582 LOC107780228
Function* spermidine synthase spermidine synthase 2 spermidine synthase 1-like spermidine synthase 2 spermidine synthase spermidine synthase 1 spermidine synthase 1-like uncharacterized LOC100282908 Spermidine synthase 2 spermidine synthase 1 spermidine synthase 1 spermidine synthase-like spermidine synthase 1 spermidine synthase 1 spermidine synthase 2 spermidine synthase 1 spermidine synthase 1 spermidine synthase 1 spermidine synthase 1 spermidine synthase 1 spermidine synthase 1 spermidine synthase 1-like spermidine synthase 1-like uncharacterized protein spermidine synthase 1 spermidine synthase-like spermidine synthase 1 spermidine synthase 1 spermidine synthase 1 spermidine synthase 1 spermidine synthase 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00480 Glutathione metabolism 4
ath01212 Fatty acid metabolism 3
ath00270 Cysteine and methionine metabolism 3
ath01240 Biosynthesis of cofactors 3
ath00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath00480 Glutathione metabolism 3
ath00270 Cysteine and methionine metabolism 3
ath00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
gma00270 Cysteine and methionine metabolism 2
gma00330 Arginine and proline metabolism 2
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 5
gma00270 Cysteine and methionine metabolism 2
gma00330 Arginine and proline metabolism 2
gma00480 Glutathione metabolism 2
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00270 Cysteine and methionine metabolism 3
sly00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03013 Nucleocytoplasmic transport 3
sly03250 Viral life cycle - HIV-1 3
sly03010 Ribosome 2
sly00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
zma00270 Cysteine and methionine metabolism 2
zma00330 Arginine and proline metabolism 2
zma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 7
zma00270 Cysteine and methionine metabolism 3
zma00340 Histidine metabolism 3
zma00290 Valine, leucine and isoleucine biosynthesis 2
zma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra00290 Valine, leucine and isoleucine biosynthesis 3
bra00770 Pantothenate and CoA biosynthesis 3
bra01210 2-Oxocarboxylic acid metabolism 3
bra00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 3
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr03010 Ribosome 3
mtr00220 Arginine biosynthesis 2
mtr00240 Pyrimidine metabolism 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 6
tae00330 Arginine and proline metabolism 6
tae00480 Glutathione metabolism 6
tae00240 Pyrimidine metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 6
tae00330 Arginine and proline metabolism 6
tae00480 Glutathione metabolism 6
tae03010 Ribosome 4
tae00240 Pyrimidine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 11
ghi00020 Citrate cycle (TCA cycle) 8
ghi00270 Cysteine and methionine metabolism 4
ghi01230 Biosynthesis of amino acids 4
ghi00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 11
ghi00020 Citrate cycle (TCA cycle) 8
ghi00270 Cysteine and methionine metabolism 4
ghi01230 Biosynthesis of amino acids 4
ghi00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 9
bna00330 Arginine and proline metabolism 9
bna00480 Glutathione metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 9
bna00330 Arginine and proline metabolism 9
bna00480 Glutathione metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 6
sbi01200 Carbon metabolism 3
sbi01210 2-Oxocarboxylic acid metabolism 3
sbi04148 Efferocytosis 2
sbi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
sot03013 Nucleocytoplasmic transport 3
sot03250 Viral life cycle - HIV-1 3
sot00270 Cysteine and methionine metabolism 2
sot00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 4
sot03008 Ribosome biogenesis in eukaryotes 3
sot03013 Nucleocytoplasmic transport 3
sot03250 Viral life cycle - HIV-1 3
sot00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 3
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00020 Citrate cycle (TCA cycle) 6
bdi01200 Carbon metabolism 6
bdi01210 2-Oxocarboxylic acid metabolism 4
bdi00010 Glycolysis / Gluconeogenesis 3
bdi00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 5
nta00020 Citrate cycle (TCA cycle) 2
nta00310 Lysine degradation 2
nta00380 Tryptophan metabolism 2
nta00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta01240 Biosynthesis of cofactors 3
nta00270 Cysteine and methionine metabolism 2
nta00330 Arginine and proline metabolism 2
nta00480 Glutathione metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838993 843367 100792107 100776863 544177 101263807 4342996 100282908 100272866 103829257 103840733 100257112 7471485 7459055 25501297 11405952 123165222 123157056 123411768 107909636 107886614 106403388 106358109 5728357 110432894 102587738 102586756 102607262 100846264 107765582 107780228
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