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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   XRN3   5'-3' exoribonuclease 3 
 ath-r.7   XRN3   5'-3' exoribonuclease 3 
 ath-m.9   XRN3   5'-3' exoribonuclease 3 
 ath-e.2   XRN3   5'-3' exoribonuclease 3 
 ath-m.4.bio   XRN3   5'-3' exoribonuclease 3 
 ath-m.4.hor   XRN3   5'-3' exoribonuclease 3 
 ath-m.4.lig   XRN3   5'-3' exoribonuclease 3 
 ath-m.4.str   XRN3   5'-3' exoribonuclease 3 
 ath-m.4.tis   XRN3   5'-3' exoribonuclease 3 
 ath-u.5   XRN2   exoribonuclease 2 
 ath-u.5   XRN4   exoribonuclease 4 
 gma-u.5   100783068   5'-3' exoribonuclease 3 
 gma-u.5   100785683   5'-3' exoribonuclease 3 
 gma-u.5   100789497   5'-3' exoribonuclease 4 
 vvi-u.5   100253751   5'-3' exoribonuclease 4 
 vvi-u.5   100263222   5'-3' exoribonuclease 3 
 vvi-u.5   100260845   5'-3' exoribonuclease 3 
 ppo-u.5   7493956   5'-3' exoribonuclease 3 
 ppo-u.5   18110978   5'-3' exoribonuclease 4 
 ppo-u.5   18104156   5'-3' exoribonuclease 4 
 mtr-u.5   112416443   5'-3' exoribonuclease 3 
 mtr-u.5   112418725   5'-3' exoribonuclease 3 
 mtr-u.5   112421174   5'-3' exoribonuclease 3 
 sly-u.5   101248085   5'-3' exoribonuclease 3-like 
 sly-u.5   XRN4   protein ETHYLENE-INSENSITIVE5 
 sly-u.5   101258556   5'-3' exoribonuclease 3 
 osa-u.5   4324952   5'-3' exoribonuclease 3 
 osa-u.5   4329368   5'-3' exoribonuclease 2 
 osa-u.5   4334408   5'-3' exoribonuclease 4 
 zma-u.5   103649964   5'-3' exoribonuclease 3 
 zma-u.5   100384297   5'-3' exoribonuclease 4 
 zma-u.5   103654383   5'-3' exoribonuclease 2 

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Top 50 coexpressed genes to XRN3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to XRN3 (ath-u.5 coexpression data)

CoexMap"843900"


athXRN3 | Entrez gene ID : 843900      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 11 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
ath03018 [list] [network] RNA degradation (114 genes)
GO BP
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (2 genes)  IMP  
GO:0000967 [list] [network] rRNA 5'-end processing  (4 genes)  IMP  
GO:0010587 [list] [network] miRNA catabolic process  (8 genes)  IMP  
GO:0060149 [list] [network] negative regulation of post-transcriptional gene silencing  (9 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA IMP ISM  
GO MF
GO:0004534 [list] [network] 5'-3' RNA exonuclease activity  (4 genes)  IDA IGI  
Protein NP_565114.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for NP_565114.1)
Subcellular
localization
TargetP
scret 6,  other 5  (predict for NP_565114.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
XRN3

.
ath-r.7
for
XRN3

.
ath-m.9
for
XRN3

.
ath-e.2
for
XRN3

.
ath-m.4.bio
for
XRN3

.
ath-m.4.hor
for
XRN3

.
ath-m.4.lig
for
XRN3

.
ath-m.4.str
for
XRN3

.
ath-m.4.tis
for
XRN3

.
ath-u.5
for
XRN2

.
ath-u.5
for
XRN4

.
gma-u.5
for
100783068

.
gma-u.5
for
100785683

.
gma-u.5
for
100789497

.
vvi-u.5
for
100253751

.
vvi-u.5
for
100263222

.
vvi-u.5
for
100260845

.
ppo-u.5
for
7493956

.
ppo-u.5
for
18110978

.
ppo-u.5
for
18104156

.
mtr-u.5
for
112416443

.
mtr-u.5
for
112418725

.
mtr-u.5
for
112421174

.
sly-u.5
for
101248085

.
sly-u.5
for
XRN4

.
sly-u.5
for
101258556

.
osa-u.5
for
4324952

.
osa-u.5
for
4329368

.
osa-u.5
for
4334408

.
zma-u.5
for
103649964

.
zma-u.5
for
100384297

.
zma-u.5
for
103654383

.


Ortholog ID: 1091
Species ath ath gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr hvu hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol XRN3 XRN4 LOC100785683 XRN4 LOC101258556 LOC4334408 LOC4324952 LOC103641862 LOC100384297 LOC103838732 LOC103828020 LOC100263222 LOC100253751 LOC18110978 LOC7493956 LOC112421174 LOC112421269 LOC123444770 LOC123400127 LOC107943427 LOC107901512 LOC106397301 LOC106421638 CHLRE_16g679900v5 CHLRE_06g280050v5 LOC8085812 LOC8083058 LOC102604337 LOC102592073 LOC102623051 LOC102610368 LOC100823403 LOC100835512 LOC107780231 LOC107808663
Function* 5'-3' exoribonuclease 3 exoribonuclease 4 5'-3' exoribonuclease 3 protein ETHYLENE-INSENSITIVE5 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 4 5'-3' exoribonuclease 4 5'-3' exoribonuclease 2 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3-like 5'-3' exoribonuclease 3-like 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3-like 5'-3' exoribonuclease 3 uncharacterized protein uncharacterized protein 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 4-like 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4-like 5'-3' exoribonuclease 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
ath04141 Protein processing in endoplasmic reticulum 2
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04016 MAPK signaling pathway - plant 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
osa04075 Plant hormone signal transduction 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
vvi03440 Homologous recombination 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu04712 Circadian rhythm - plant 2
hvu03018 RNA degradation 2
hvu04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
ghi03040 Spliceosome 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03250 Viral life cycle - HIV-1 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00600 Sphingolipid metabolism 2
cit04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta03040 Spliceosome 2
nta04120 Ubiquitin mediated proteolysis 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00520 Amino sugar and nucleotide sugar metabolism 3
nta04016 MAPK signaling pathway - plant 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843900 841891 100785683 100147714 101258556 4334408 4324952 103641862 100384297 103838732 103828020 100263222 100253751 18110978 7493956 112421174 112421269 123444770 123400127 107943427 107901512 106397301 106421638 66056704 5720902 8085812 8083058 102604337 102592073 102623051 102610368 100823403 100835512 107780231 107808663
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