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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   APL   Homeodomain-like superfamily protein 
 ath-r.7   APL   Homeodomain-like superfamily protein 
 ath-m.9   APL   Homeodomain-like superfamily protein 
 ath-e.2   APL   Homeodomain-like superfamily protein 
 ath-m.4.bio   APL   Homeodomain-like superfamily protein 
 ath-m.4.hor   APL   Homeodomain-like superfamily protein 
 ath-m.4.lig   APL   Homeodomain-like superfamily protein 
 ath-m.4.str   APL   Homeodomain-like superfamily protein 
 ath-m.4.tis   APL   Homeodomain-like superfamily protein 
 gma-u.5   PHR26   MYB-CC domain-containing transcription factor PHR26 
 gma-u.5   PHR12   MYB-CC domain-containing transcription factor PHR12 
 gma-u.5   PHR27   MYB-CC domain-containing transcription factor PHR27 
 vvi-u.5   100256921   myb family transcription factor APL-like 
 ppo-u.5   7460667   myb family transcription factor IPN2 
 ppo-u.5   7464560   myb family transcription factor IPN2 
 mtr-u.5   120577743   myb family transcription factor IPN2 
 mtr-u.5   25497052   myb family transcription factor IPN2 
 sly-u.5   101255369   myb family transcription factor IPN2 
 osa-u.5   4328460   myb family transcription factor IPN2 
 osa-u.5   4341774   myb family transcription factor IPN2 
 zma-u.5   103626675   myb family transcription factor IPN2 

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Top 50 coexpressed genes to APL (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to APL (ath-u.5 coexpression data)

CoexMap"844281"


athAPL | Entrez gene ID : 844281      
Species ath gma vvi ppo mtr sly osa zma nta bna tae bdi sot bra sbi hvu cit cre ghi
Paralog 9 3 1 2 2 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010088 [list] [network] phloem development  (31 genes)  IMP  
GO:0010089 [list] [network] xylem development  (46 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_565209.1 [sequence] [blastp]
NP_849905.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 4  (predict for NP_565209.1)
nucl 7,  cyto 1,  extr 1,  pero 1,  cysk 1,  cyto_pero 1  (predict for NP_849905.1)
Subcellular
localization
TargetP
mito 6  (predict for NP_565209.1)
other 7  (predict for NP_849905.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
APL

.
ath-r.7
for
APL

.
ath-m.9
for
APL

.
ath-e.2
for
APL

.
ath-m.4.bio
for
APL

.
ath-m.4.hor
for
APL

.
ath-m.4.lig
for
APL

.
ath-m.4.str
for
APL

.
ath-m.4.tis
for
APL

.
gma-u.5
for
PHR26

.
gma-u.5
for
PHR12

.
gma-u.5
for
PHR27

.
vvi-u.5
for
100256921

.
ppo-u.5
for
7460667

.
ppo-u.5
for
7464560

.
mtr-u.5
for
120577743

.
mtr-u.5
for
25497052

.
sly-u.5
for
101255369

.
osa-u.5
for
4328460

.
osa-u.5
for
4341774

.
zma-u.5
for
103626675

.


Ortholog ID: 5435
Species ath gma gma sly osa osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol APL PHR26 PHR27 LOC101255369 LOC4328460 LOC4341774 LOC103626675 LOC103832420 LOC103853188 LOC100256921 LOC7460667 LOC7464560 LOC120577743 LOC25497052 LOC123136621 LOC123132548 LOC123402046 LOC107893533 LOC107909150 LOC106430728 LOC106429714 LOC8076125 LOC102579728 LOC102624965 LOC100842553 LOC107771220 LOC107818205
Function* Homeodomain-like superfamily protein MYB-CC domain-containing transcription factor PHR26 MYB-CC domain-containing transcription factor PHR27 myb family transcription factor IPN2 myb family transcription factor IPN2 myb family transcription factor IPN2 myb family transcription factor IPN2 myb family transcription factor APL myb family transcription factor APL myb family transcription factor APL-like myb family transcription factor IPN2 myb family transcription factor IPN2 myb family transcription factor IPN2 myb family transcription factor IPN2 myb family transcription factor IPN2 myb family transcription factor IPN2 myb family transcription factor IPN2 myb family transcription factor IPN2 myb family transcription factor IPN2 myb family transcription factor APL myb family transcription factor APL-like myb family transcription factor APL myb family transcription factor APL myb family transcription factor IPN2 myb family transcription factor APL myb family transcription factor IPN2 myb family transcription factor APL-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00380 Tryptophan metabolism 3
ghi00966 Glucosinolate biosynthesis 3
ghi01210 2-Oxocarboxylic acid metabolism 3
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00591 Linoleic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844281 100796268 100807793 101255369 4328460 4341774 103626675 103832420 103853188 100256921 7460667 7464560 120577743 25497052 123136621 123132548 123402046 107893533 107909150 106430728 106429714 8076125 102579728 102624965 100842553 107771220 107818205
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