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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   SOD1   superoxide dismutase [Cu-Zn] 
 gma-r.7   SOD1   superoxide dismutase [Cu-Zn] 
 gma-u.5   100305732   superoxide dismutase [Cu-Zn] 
 mtr-u.5   11432262   superoxide dismutase [Cu-Zn] 
 ppo-u.5   18098883   superoxide dismutase [Cu-Zn] 2 
 ppo-u.5   7473899   superoxide dismutase [Cu-Zn] 
 ath-u.5   CSD1   copper/zinc superoxide dismutase 1 
 vvi-u.5   100241809   superoxide dismutase [Cu-Zn] 
 sly-u.5   SODCC.1   superoxide dismutase [Cu-Zn] 1 
 osa-u.5   4344210   superoxide dismutase [Cu-Zn] 2-like 
 osa-u.5   4332846   superoxide dismutase [Cu-Zn] 1-like 
 zma-u.5   542722   superoxide dismutase 4 
 zma-u.5   103639134   superoxide dismutase [Cu-Zn] 4AP 
 zma-u.5   542260   superoxide dismutase 2 

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Top 50 coexpressed genes to SOD1 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SOD1 (gma-u.5 coexpression data)

CoexMap"100499991"


gmaSOD1 | Entrez gene ID : 100499991      
Species gma mtr ppo ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 1 2 1 1 1 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx04146 [list] [network] Peroxisome (156 genes)
GO BP
GO:0006801 [list] [network] superoxide metabolic process  (19 genes)  IEA  
GO CC
GO MF
GO:0005507 [list] [network] copper ion binding  (135 genes)  IEA  
Protein NP_001235298.1 [sequence] [blastp]
XP_014626809.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 10  (predict for NP_001235298.1)
chlo 4,  cyto 3,  vacu 1,  E.R. 1,  cyto_nucl 1,  E.R._vacu 1,  cyto_pero 1,  cyto_plas 1  (predict for XP_014626809.1)
Subcellular
localization
TargetP
other 5  (predict for NP_001235298.1)
other 4,  scret 3  (predict for XP_014626809.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
SOD1

.
gma-r.7
for
SOD1

.
gma-u.5
for
100305732

.
mtr-u.5
for
11432262

.
ppo-u.5
for
18098883

.
ppo-u.5
for
7473899

.
ath-u.5
for
CSD1

.
vvi-u.5
for
100241809

.
sly-u.5
for
SODCC.1

.
osa-u.5
for
4344210

.
osa-u.5
for
4332846

.
zma-u.5
for
542722

.
zma-u.5
for
103639134

.
zma-u.5
for
542260

.


Ortholog ID: 6121
Species ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sbi sot cit bdi nta nta
Symbol CSD1 SOD1 LOC100305732 SODCC.1 LOC4332846 LOC4344210 LOC542722 LOC542260 LOC103843378 LOC103871624 LOC100241809 LOC18098883 LOC7473899 LOC11432262 LOC123051671 LOC123043809 LOC123395626 LOC107937143 LOC107893157 LOC106411572 LOC106377019 LOC110431820 LOC110432872 LOC102577750 LOC102628406 LOC100840092 LOC107790449 LOC107774639
Function* copper/zinc superoxide dismutase 1 superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] 1 superoxide dismutase [Cu-Zn] 1-like superoxide dismutase [Cu-Zn] 2-like superoxide dismutase 4 superoxide dismutase 2 superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] 1 superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] 4A superoxide dismutase [Cu-Zn] 4A superoxide dismutase [Cu-Zn] 4A-like superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] 1 superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] 4A superoxide dismutase [Cu-Zn] 2 Cu/Zn-superoxide dismutase superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] 4A superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn]
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly03018 RNA degradation 2
sly04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00010 Glycolysis / Gluconeogenesis 4
osa01230 Biosynthesis of amino acids 4
osa04146 Peroxisome 4
osa01200 Carbon metabolism 3
osa00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00010 Glycolysis / Gluconeogenesis 6
osa01200 Carbon metabolism 4
osa01230 Biosynthesis of amino acids 4
osa04146 Peroxisome 4
osa00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04146 Peroxisome 4
zma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04146 Peroxisome 4
zma00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 6
bra04146 Peroxisome 3
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 6
bra04146 Peroxisome 3
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04146 Peroxisome 3
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04146 Peroxisome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04146 Peroxisome 4
ppo00860 Porphyrin metabolism 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 5
mtr04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 5
tae00030 Pentose phosphate pathway 4
tae01200 Carbon metabolism 4
tae00480 Glutathione metabolism 4
tae00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 6
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 3
hvu04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00010 Glycolysis / Gluconeogenesis 4
sbi00710 Carbon fixation by Calvin cycle 4
sbi01200 Carbon metabolism 4
sbi01230 Biosynthesis of amino acids 4
sbi00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 5
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
sbi01230 Biosynthesis of amino acids 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 3
sot04146 Peroxisome 2
sot04141 Protein processing in endoplasmic reticulum 2
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 14
cit04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 5
nta00020 Citrate cycle (TCA cycle) 3
nta00785 Lipoic acid metabolism 3
nta01200 Carbon metabolism 3
nta01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 5
nta01210 2-Oxocarboxylic acid metabolism 5
nta00350 Tyrosine metabolism 4
nta00190 Oxidative phosphorylation 4
nta00020 Citrate cycle (TCA cycle) 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837405 100499991 100305732 544054 4332846 4344210 542722 542260 103843378 103871624 100241809 18098883 7473899 11432262 123051671 123043809 123395626 107937143 107893157 106411572 106377019 110431820 110432872 102577750 102628406 100840092 107790449 107774639
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