ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100783000	uncharacterized LOC100783000
gma-r.7	100783000	uncharacterized LOC100783000
gma-u.5	100500559	uncharacterized LOC100500559
mtr-u.5	25489836	uncharacterized LOC25489836
ppo-u.5	7455224	uncharacterized LOC7455224
ath-u.5	AT3G56290	potassium transporter
bra-r.6	103841538	uncharacterized LOC103841538
bra-r.6	103830048	uncharacterized LOC103830048
vvi-u.5	100241651	uncharacterized LOC100241651
ghi-r.1	107962215	uncharacterized LOC107962215
ghi-r.1	107931583	uncharacterized LOC107931583
bna-r.1	106364946	uncharacterized LOC106364946
bna-r.1	106352915	uncharacterized LOC106352915
bna-r.1	BNAC08G27250D	uncharacterized BNAC08G27250D
cit-r.1	102620937	uncharacterized LOC102620937
sly-u.5	101258159	uncharacterized LOC101258159
sot-r.1	102588672	uncharacterized LOC102588672
nta-r.1	107791388	uncharacterized LOC107791388
nta-r.1	107819606	uncharacterized LOC107819606
osa-u.5	4327573	uncharacterized LOC4327573
zma-u.5	100275213	uncharacterized LOC100275213
tae-r.2	123079593	uncharacterized LOC123079593
tae-r.2	123071238	uncharacterized LOC123071238
tae-r.2	123062449	uncharacterized LOC123062449
hvu-r.1	123444731	uncharacterized LOC123444731
sbi-r.1	8085404	uncharacterized LOC8085404
bdi-r.1	100843443	uncharacterized LOC100843443
cre-r.1	CHLRE_03g144184v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0009658 [list] [network] chloroplast organization	(139 genes)	IEA
GO:0045893 [list] [network] positive regulation of DNA-templated transcription	(532 genes)	IEA

GO CC

GO MF

Protein

XP_003526808.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, chlo 4

(predict for XP_003526808.1)

Subcellular
localization
TargetP

chlo 7

(predict for XP_003526808.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100783000	gma-r.7 for 100783000	gma-u.5 for 100500559	mtr-u.5 for 25489836	ppo-u.5 for 7455224	ath-u.5 for AT3G56290	bra-r.6 for 103841538	bra-r.6 for 103830048	vvi-u.5 for 100241651	ghi-r.1 for 107962215	ghi-r.1 for 107931583	bna-r.1 for 106364946	bna-r.1 for 106352915	bna-r.1 for BNAC08G27250D	cit-r.1 for 102620937	sly-u.5 for 101258159	sot-r.1 for 102588672	nta-r.1 for 107791388	nta-r.1 for 107819606	osa-u.5 for 4327573	zma-u.5 for 100275213	tae-r.2 for 123079593	tae-r.2 for 123071238	tae-r.2 for 123062449	hvu-r.1 for 123444731	sbi-r.1 for 8085404	bdi-r.1 for 100843443	cre-r.1 for CHLRE_03g144184v5

Ortholog

Ortholog ID: 8510

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC100783000

uncharacterized LOC100500559

uncharacterized LOC25489836

uncharacterized LOC7455224

potassium transporter

uncharacterized LOC103841538

uncharacterized LOC103830048

uncharacterized LOC100241651

uncharacterized LOC107962215

uncharacterized LOC107931583

uncharacterized LOC106364946

uncharacterized LOC106352915

uncharacterized LOC106402461

uncharacterized LOC102620937

uncharacterized LOC101258159

uncharacterized LOC102588672

uncharacterized LOC107791388

uncharacterized LOC107819606

uncharacterized LOC4327573

uncharacterized LOC100275213

uncharacterized LOC123079593

uncharacterized LOC123071238

uncharacterized LOC123062449

uncharacterized LOC123444731

uncharacterized LOC8085404

uncharacterized LOC100843443

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00900	Terpenoid backbone biosynthesis	3
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00073	Cutin, suberine and wax biosynthesis	2
ghi00561	Glycerolipid metabolism	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00073	Cutin, suberine and wax biosynthesis	2
ghi00561	Glycerolipid metabolism	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04517	IgSF CAM signaling	2
bna04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00860	Porphyrin metabolism	2
cit04120	Ubiquitin mediated proteolysis	2
cit04712	Circadian rhythm - plant	2
cit00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00999	Biosynthesis of various plant secondary metabolites	6
sot00940	Phenylpropanoid biosynthesis	3
sot00100	Steroid biosynthesis	2
sot04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01200	Carbon metabolism	4
nta00380	Tryptophan metabolism	2
nta00630	Glyoxylate and dicarboxylate metabolism	2
nta04016	MAPK signaling pathway - plant	2
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
nta00940	Phenylpropanoid biosynthesis	2
nta00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00073	Cutin, suberine and wax biosynthesis	4
tae00195	Photosynthesis	3
tae04075	Plant hormone signal transduction	3
tae00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00402	Benzoxazinoid biosynthesis	2
tae00999	Biosynthesis of various plant secondary metabolites	2
tae00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	3
tae00073	Cutin, suberine and wax biosynthesis	3
tae04712	Circadian rhythm - plant	2
tae04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01240	Biosynthesis of cofactors	2

Expression

Expression pattern

Entrez Gene ID^*

100783000

100500559

25489836

7455224

824796

103841538

103830048

100241651

107962215

107931583

106364946

106352915

106402461

102620937

101258159

102588672

107791388

107819606

4327573

100275213

123079593

123071238

123062449

123444731

8085404

100843443

66052662

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100783000 (gma-u.5 coexpression data)

Top 50 enrichment test to 100783000 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	1	1	1	2	1	2	3	1	1	1	2	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100783000 (gma-u.5 coexpression data)

Top 50 enrichment test to 100783000 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**