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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5  100787089  pentatricopeptide repeat-containing protein At2g04860 
 gma-r.7  100787089  pentatricopeptide repeat-containing protein At2g04860 
 mtr-u.5  11431817  pentatricopeptide repeat-containing protein At2g04860 
 ppo-u.5  18104895  pentatricopeptide repeat-containing protein At2g04860 
 ath-u.5  AT2G04860  Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6  103860319  pentatricopeptide repeat-containing protein At2g04860 
 vvi-u.5  100250665  pentatricopeptide repeat-containing protein At2g04860 
 ghi-r.1  107922427  pentatricopeptide repeat-containing protein At2g04860 

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Top 50 coexpressed genes to 100787089 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100787089 (gma-u.5 coexpression data)

CoexMap"100787089"


gmaLOC100787089 | Entrez gene ID : 100787089
Species gma mtr ppo ath bra vvi ghi sbi osa sot sly cit tae bna hvu zma cre nta bdi
Paralog 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (407 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (10455 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (2019 genes)  IEA  
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_003527718.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  mito 1,  plas 1,  E.R. 1,  nucl_plas 1,  E.R._plas 1,  mito_plas 1  (predict for XP_003527718.1)
Subcellular
localization
TargetP
scret 3,  chlo 3  (predict for XP_003527718.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

gma-u.5
for
100787089


gma-r.7
for
100787089


mtr-u.5
for
11431817


ppo-u.5
for
18104895


ath-u.5
for
AT2G04860


bra-r.6
for
103860319


vvi-u.5
for
100250665


ghi-r.1
for
107922427



Ortholog ID: 15806
Species gma mtr ppo ath bra vvi ghi
Symbol LOC100787089 LOC11431817 LOC18104895 AT2G04860 LOC103860319 LOC100250665 LOC107922427
Function* pentatricopeptide repeat-containing protein At2g04860 pentatricopeptide repeat-containing protein At2g04860 pentatricopeptide repeat-containing protein At2g04860 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At2g04860 pentatricopeptide repeat-containing protein At2g04860 pentatricopeptide repeat-containing protein At2g04860
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100787089 11431817 18104895 815032 103860319 100250665 107922427
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